| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3558 |
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| Symbol | |
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| ID | 5541059 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 4643587 |
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| End bp | 4644699 |
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| Gene Length | 1113 bp |
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| Protein Length | 370 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640895677 |
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| Product | cytochrome c oxidase subunit II |
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| Protein accession | YP_001433625 |
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| Protein GI | 156743496 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1622] Heme/copper-type cytochrome/quinol oxidases, subunit 2 |
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| TIGRFAM ID | [TIGR02866] cytochrome c oxidase, subunit II |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.22857 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCACGC TTCCTCGGAA CCTTCGCAGA TGGTCGCGTT TGCTTCTCCT GATTGGTCTT
GCGGTTGTGC CTGCCGCCTG CGGCAACACT CCCGGCAATA CCTATGACCC CTACGGCGAT
AACGCGCGCC GCATCTACGA ACTCCTTATT CCAATCTGGT GGATGGCGCT CGGCGTGTTC
GTTGTCGTCG AGGGGTTGCT CGTTTATGCG ATCTGGCGCT TCCGCCGACG TCCCGGCAGT
GCGGCGATGC CGTCGCAGGT GCATGGCAAC ACCCAGGTCG AAATTCTGTG GACCATTGCG
CCCGCAATTA TTGTGCTGGT CATTGCGGTG TTGACCTTCC GCACCCAGGC GGCTAATGCG
ATCATGCCCG AGGATGCGCT GCGGATCAAA GCCATTGGGC ATCAGTGGTG GTTCGAGTTT
CAGTATCCTG ATGCTGGTGC TGACGGCAAG CCGGTGGTGA CCGCTTCCGA CATGTACATC
CCGGTTGGGC GACCGGTGAC GGTCGTGCTG GAATCGCAGG ATGTCATCCA TAATTTCTGG
GTGCCGAAGC TTGCCGGGAA GACCTACATG ATCCCCGGCA AGACGAATTT CCTGACGTTC
ACTGCCGAAC AACCCGGCAT CTACCGCGCG GTGTGCGCCG AGTTCTGTGG CGAAGCGCAC
GCGCTGATGC GCTTCCGTGT CATTGCTGTC GATGAATCGG AGTTCAATCG CTGGATCGAA
CAGAAGAAGA CCCCGCCATC TGCGCCTGCC GGAACGTTGA CCGTCAACGG GTTGACCGGC
GATGCAACGC GCGGTCAGGC GATTTTCCTC GATGCGCGCA AGCAGTGCAT TGCCTGTCAC
GCGGTCGAAG GGACGAATGC GCGTGGGCAA ATTGGTCCGA ATCTGACGTA CTACGGCAGC
CGCCAGACGA TTGCTGCCGG TATTCTTCCA TACTCGCCGG AAAATCTCGA GCGCTGGCTG
CGCGAGGCGC CGAAGCTGAA ACCCGGCAAC TTGATGAGCC GGGTGTTGAC GCCGCAATGG
ATCAAGGCGA ATCTGAGCGA CCAGGAAATT GCCGATCTTG TCGCTTACCT CAATAGTATG
AAGGTGTCGG TCACGCTGCC GCCAGAACGC TAG
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| Protein sequence | MSTLPRNLRR WSRLLLLIGL AVVPAACGNT PGNTYDPYGD NARRIYELLI PIWWMALGVF
VVVEGLLVYA IWRFRRRPGS AAMPSQVHGN TQVEILWTIA PAIIVLVIAV LTFRTQAANA
IMPEDALRIK AIGHQWWFEF QYPDAGADGK PVVTASDMYI PVGRPVTVVL ESQDVIHNFW
VPKLAGKTYM IPGKTNFLTF TAEQPGIYRA VCAEFCGEAH ALMRFRVIAV DESEFNRWIE
QKKTPPSAPA GTLTVNGLTG DATRGQAIFL DARKQCIACH AVEGTNARGQ IGPNLTYYGS
RQTIAAGILP YSPENLERWL REAPKLKPGN LMSRVLTPQW IKANLSDQEI ADLVAYLNSM
KVSVTLPPER
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