Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_3551 |
Symbol | |
ID | 5541052 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 4632603 |
End bp | 4634501 |
Gene Length | 1899 bp |
Protein Length | 632 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640895670 |
Product | ABC transporter related |
Protein accession | YP_001433618 |
Protein GI | 156743489 |
COG category | [V] Defense mechanisms |
COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.127969 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGTTTCC TCATGGACGG CCTGGCGGCC GAGGCATACG ACCGCAGTTA CAGTGATCGG GCGCTGATCC GGCGCATCTG GCGCTATTTC CGCCCCCACA GCGGGCGCGT CGCGCTGGTG GCGCTCATGG TTGTCCTCGG ATCACTCGTC GCAACGGTCA TTCCGATCAC GATTTCGCGC AGCATCGAAC TGCTGACAGG CGACCCGGCG GCTCAGGTGT TGATCGGACT CGCCGCCATC ATCGCCGTTA TGGGCGCGTT GGGGTGGTTC TTCAACTTCG TGCGGCAGAC CTTCTCGGCG CGCGCGGTTG GCGATGTGGT GCTGGCGCTG CGCGAAGACG CATATCGCGC CGTGTTGCAG CGCGATATGT CGTTCTACGA CCAGTACGCC TCGGGGCGCA TCGTCAGCCG GGTAACCTCG GATACGCAGG ATTTTGCAAC GGTCGTGACG CTGACAATCG ATCTGCTCAG CCAGTTGTTG CTGGTCGTGA TCATCGCAGT GGTCATGGTC ACGATCAACT GGCAACTGGC GCTGATCACG CTGGCGACCG GTCCGATTGT CATTGCGGCG GCGCTGACGT TCCGCCATGT TGCGCGACTG ACGACGCGCC AGGCGCAACG CGCGCTGGCG AATGTCAACG CTTCGATCCA GGAAACGGTC AGCGGCATTG CAGTCGCTAA AAGTTTCCGC CAGGAAGCGG CGATCTATCA GCAGTTCCGC CAGACGAACG AACTGGCGTT TCAGGTGCGT TTGCGCCAGG GACTCGTCTT CAGCAGTATC TTTCCGATAT TGAACCTGCT CTCCGGTATT GCCATTGCCA CAATTATCTA CTTCGGCGGA CGGTTGGCGC TTGGTGGGTC GGTTTCGGTT GGGGAATGGT ATCTGTTTGT GCAGAGTCTG GCGATCTACT TCTTCCCATT GACCAGCATC GCGTCGTTCT GGAGCCAGTT TCAACAAGGG TTATCCGCTA GCGAGCGCGT CTTCGCACTG ATCGACGCCG AGCCGAAGGT GGTGCAGATT GGGAATGAAC CGGCGCCACA CCTCATCGGG CGTATCGAGT TTCGGGATGT GTGGTTCACC TACGATACCG GACAGGATCG CACCGCAGGA TCGCCATCGT CCGCATCGGT GCAGTGGGTG TTGCCGGGGT TCTCGCTCGT GATCCCCGCG GGGCAGAAAC TGGCCGTCGT GGGGCACACC GGCGCCGGCA AGTCGAGCCT GATCAAACTG ATCACCCGCT TCTATGAGTT TCAGGCAGGT CAATTGCTCA TCGACGGACG CGATATTCGC GCGCTGGACC TGGCGCAGTA CCGCCGACAG ATCGGGCTGG TGCCGCAGTC GCCGTTTTTG TTTTCCGGTA CCGTCGCCGA CAACATTCGC TATGGTCGTC CAGAAGCGAC GATGGCGGAT GTGGAGACGG CAGCGCGCCG GTTGGGGAGC GAGTGGATCG CGGACCTGCC CCATGGTCTG GAGACGGATG TCGGCGAGCG CGGCGCGCGA CTGTCGCTTG GGCAAAGGCA GTTGGTCGCA TTGGCGCGGG TTCTGTTGCA AAACCCATCG ATCTTCATCC TCGACGAAGC CACGGCGAGC ATCGATCCAT TCACCGAAAC CCAGGTTCAG GAAGGGCTGG ATGTCGTGAT GCAGGGGCGA ACGAGCATTA TTATTGCCCA CCGTCTCTCG ACCGTCCGTA CCGCCGACCG GATCATTGTG CTCAAACAGG GGCGAATCAT CGAAGAAGGA AACCACGACG ATCTTCTGGC ATCGGGCGGG CATTACGCCG AACTGTACAA TACGTACTTC CGCCACCAGT CGCTGGATTA TAAGCCATGG GAGGAAGAGA GCCGAGAACT GAGCGCCAAG AACCTGGGAT CGCAGGCGTT TCGCCCGCAT GCGGGTTAG
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Protein sequence | MGFLMDGLAA EAYDRSYSDR ALIRRIWRYF RPHSGRVALV ALMVVLGSLV ATVIPITISR SIELLTGDPA AQVLIGLAAI IAVMGALGWF FNFVRQTFSA RAVGDVVLAL REDAYRAVLQ RDMSFYDQYA SGRIVSRVTS DTQDFATVVT LTIDLLSQLL LVVIIAVVMV TINWQLALIT LATGPIVIAA ALTFRHVARL TTRQAQRALA NVNASIQETV SGIAVAKSFR QEAAIYQQFR QTNELAFQVR LRQGLVFSSI FPILNLLSGI AIATIIYFGG RLALGGSVSV GEWYLFVQSL AIYFFPLTSI ASFWSQFQQG LSASERVFAL IDAEPKVVQI GNEPAPHLIG RIEFRDVWFT YDTGQDRTAG SPSSASVQWV LPGFSLVIPA GQKLAVVGHT GAGKSSLIKL ITRFYEFQAG QLLIDGRDIR ALDLAQYRRQ IGLVPQSPFL FSGTVADNIR YGRPEATMAD VETAARRLGS EWIADLPHGL ETDVGERGAR LSLGQRQLVA LARVLLQNPS IFILDEATAS IDPFTETQVQ EGLDVVMQGR TSIIIAHRLS TVRTADRIIV LKQGRIIEEG NHDDLLASGG HYAELYNTYF RHQSLDYKPW EEESRELSAK NLGSQAFRPH AG
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