| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3539 |
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| Symbol | |
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| ID | 5541038 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 4615176 |
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| End bp | 4615781 |
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| Gene Length | 606 bp |
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| Protein Length | 201 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640895656 |
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| Product | 2'-5' RNA ligase |
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| Protein accession | YP_001433606 |
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| Protein GI | 156743477 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1514] 2'-5' RNA ligase |
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| TIGRFAM ID | [TIGR02258] 2'-5' RNA ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.146255 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATACAG CGACCTGCCG TTTATTCATT GCGGTAGAAC TGCCCAATGC TCTCCGCGAA
GAGCTGACAG TGCTGCAACA GCGGCTCAAG CGCGATCAAC CGCCGGTGCG CTGGGTGGAA
CCAAACGCGA TGCACCTGAC GCTCTGGTTT CTGGGGGATG TTTCAGGCGA TCAGGTGGCG
CATTTGAGAG TTGCACTGAT GCTGGCGTTC GCCGGGCAAC AGGCGGTGCG CGTACAACTT
GGCGCTCCCG GCGCTTTTCC CAACCTGCAA CGTCCGCAGG TCATCTGGAT CGGACTGGCG
GAAGGAGAGA TGCACCTGCG TGTGTGGTAC GATGCACTGG CGCGTCGACT GCCTTCTCTT
GGGTTTCAAC CTGACCCTCG ACCGTTTCGA CCGCATCTGA CCCTGGGGCG GGTGCGCCGC
GATGCGTCGG CGGAACAGCA GCAGCGCCTT GGCGCCGCGC TTCGCTCCCT CAAACTCCCT
TCCGACCATG TGTGGGATCT TCAGCGTGTC GTGCTGTTTC GTAGCGACCT GCGCCCCGAA
GGACCCCGCT ACACGGCGCT GGCAGAGGTG GATGTGCAGG GGTCAGGGGT TAGGGGCGTT
GCTTAA
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| Protein sequence | MNTATCRLFI AVELPNALRE ELTVLQQRLK RDQPPVRWVE PNAMHLTLWF LGDVSGDQVA
HLRVALMLAF AGQQAVRVQL GAPGAFPNLQ RPQVIWIGLA EGEMHLRVWY DALARRLPSL
GFQPDPRPFR PHLTLGRVRR DASAEQQQRL GAALRSLKLP SDHVWDLQRV VLFRSDLRPE
GPRYTALAEV DVQGSGVRGV A
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