Gene Rcas_3537 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_3537 
Symbol 
ID5541036 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp4611598 
End bp4612761 
Gene Length1164 bp 
Protein Length387 aa 
Translation table11 
GC content62% 
IMG OID640895654 
Product2-alkenal reductase 
Protein accessionYP_001433604 
Protein GI156743475 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.355186 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAGAACC GCACTGCCGA GAAGCGTTCC CCCTGTCTGA CGTATGCCCT CATTGGCGCT 
TTGAGCCTGG TGAGCGGTAT AGTCGGCGTG ATGATCGGCG GTGCGCTGAT CTGGTTCTTC
ATTGCGCGTC CGCTGGCGGA CCAGGCGGCT CTGGCGCCAT CTGCCACTCC TGCGCCGCCG
ACCCCTCCTC CACTTCAGCC GACTGTGGGC GCCGGTGATC CGGTGCGCCT GGCGCCAGCG
CGCGTCGCGC GCGAGGTTGG TCCGTCGGTC GTGACGGTGG TATCACAGTT GCCGTCACAG
GGTGGGTTTT TCGGCACGTT TCAGCCGCCG CCTGCCCGTG GTTCGGGTGT CATCATCGAT
GCGCGCGGGT ATATCATCAC GAACTATCAC GTTGTCGAGG GCGCGCGTCA GTTGTATGTC
ATTCTCGCCG ATGGTCGGCA GCAACCGGCG CAACTGGTCG GAAGCGATTA CCCGTTCAGC
GATCTGGCGC TGGTCAAGAT CGATGGCGAC GCCTACCCTG CGGCGCGTTT GGGAGACTCC
GACGCCGTGC AACCGGGGGA ATGGGTGATC GCTATTGGCA GCGCGCTGGG AGACTTGCGC
AATTCAGTGA CGATTGGCGT GGTCAGTGGG CTTGGTCGCT CGCTTCAGAC GCGCGATGTT
GTGCTGGATG ACCTGATCCA GACCGATGCC TCGATTAATC GTGGGAACTC CGGCGGTCCG
CTGGTCAACC TCGATGGTGA GGTCATCGGG ATCAACACGG CCATTATTCG CGGCGGCACA
GAGCAGGCGG AAGGGATCGG GTTTGCGATT CCGAGCAACA CGGTGCGCTA TGTTGCCGAT
CAATTGATTA CGCGCGGCAG GGTGGCGCGT CCCTACCTGC CAATCGAGTT TGTTCCGATC
ACGCCGCGCC TGGCAGCATG GTACAACCTG CCGGTCGATT ATGGGTTGTT TCTTCGAGGA
GTCGGACGAG GATCGGGGTT GGAGCGAGCA GGGGTGCGAC CGGGCGATAT TCTGTTGTCG
CTTGGCGGCC AGCGTATCGA CGAAGAACAT CCACTGTTGC GCATCCTGGC GCGGCATCAG
GTCGGCGAAG AGGTTGAGAT CGAGATCTGG CGCGAGAATA CAGTCCAGGC GCTGCGTGTG
ACGCTCGAGG AATTGCCGCG ATAG
 
Protein sequence
MENRTAEKRS PCLTYALIGA LSLVSGIVGV MIGGALIWFF IARPLADQAA LAPSATPAPP 
TPPPLQPTVG AGDPVRLAPA RVAREVGPSV VTVVSQLPSQ GGFFGTFQPP PARGSGVIID
ARGYIITNYH VVEGARQLYV ILADGRQQPA QLVGSDYPFS DLALVKIDGD AYPAARLGDS
DAVQPGEWVI AIGSALGDLR NSVTIGVVSG LGRSLQTRDV VLDDLIQTDA SINRGNSGGP
LVNLDGEVIG INTAIIRGGT EQAEGIGFAI PSNTVRYVAD QLITRGRVAR PYLPIEFVPI
TPRLAAWYNL PVDYGLFLRG VGRGSGLERA GVRPGDILLS LGGQRIDEEH PLLRILARHQ
VGEEVEIEIW RENTVQALRV TLEELPR