| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3518 |
|---|
| Symbol | |
|---|
| ID | 5541017 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 4583032 |
|---|
| End bp | 4584234 |
|---|
| Gene Length | 1203 bp |
|---|
| Protein Length | 400 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640895636 |
|---|
| Product | L-carnitine dehydratase/bile acid-inducible protein F |
|---|
| Protein accession | YP_001433586 |
|---|
| Protein GI | 156743457 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAATCAAG GCGTACAGTT TTTGCGCGGT GTTCGTGTGA TTGAATTGTC CCACGCCGTG
CTTGGCCCAG CGTGCGGTCT GGTGCTCGCC GAATTAGGCG CAACAGTGAC ACGGGTTGAG
CGTGCTCCTG ATGGCGACGA TACGCGCCGG CTCAAAGGCT TCGGAATGGG GTATTTTCCT
TTCTTTAATC GCGGTAAGCG CAGTGTTGCA ATCGATCTCA AAACTGCCGC CGGTCTTGAC
ATTGTGAAGC GCATGGTCGC TCAAGCCGAT GTCATCATCG AAAATTTTAG CCCCGGCGTT
ATGGAGCGAC TGGGACTCGC CTATCGCGAT GTCGCTACGA TAAATCCACG TCTGATCTAC
TGTTCGCTCA AAGGATTTTT GCCGGGTCCC TACGAGAAGC GGCTTGCGCT CGATGAGGTG
GTGCAGATGA TGTCCGGCCT CGCCTACATG ACTGGTCCGC CGGGCCAACC GCTGCGCGCC
GGCGCTTCGG TTATTGATAT TATGAGTGGC TTATTTGGCG CGCTAGGAGT GATCACAGCG
CTGCACGAGC GTGCTCAGGA TGGACGTGGC CGTTTGGTGC AGAGTGGTCT GTTTGAAACT
GCCGCCTTCG TGATGGGACA TCATATGGCC TACGCCGCGC TTACTAAAAC GCCGGTTCCA
CCAATGCCGG CCCGCGTCAG TGCATGGTCT GTTTACCGCA CCTTCACCAG CGCCGATGGA
CAACAGATTT TCATCGGTAT TACCAGCGAT AAACATTGGC GACAGTTTTG CATGGCGTTT
GGTCGCGAGG ACTTGTTGGA CGATCCGCGC TTAGCCACGA ATAACCAACG CATCAATGAG
CGTGAGCGGT TATTGCCGCT GCTCGAGCAG TTCTTCGTGT CATTGTCAAG TGACGAGATT
CTACGCCGTT GTGAACAGGC AGGGATACCT TTTGCACCAG TAGCGCGACC GGAAGACCTC
TTCACCGATC CGCACTTGTT GCAGAGCAAT ATCCTCGTTG AAGTCGAATT GCCCGGCAGC
GTCCATACCC GGCTGCCCCG TTTGCCCATG CTGCTCGATG GCAATCATTG CCATTCAGAT
CAATCGTTGC CGCCGGTTGG CGCCCATACC GGCGAGGTGT TGGCTGAGTT GGGATACACG
GATGCTGAAA TGGCGGCATT GAGTCGGGCC GGTGTGATTG TGATGACTAA TGGCGGTTCA
TAG
|
|---|
| Protein sequence | MNQGVQFLRG VRVIELSHAV LGPACGLVLA ELGATVTRVE RAPDGDDTRR LKGFGMGYFP
FFNRGKRSVA IDLKTAAGLD IVKRMVAQAD VIIENFSPGV MERLGLAYRD VATINPRLIY
CSLKGFLPGP YEKRLALDEV VQMMSGLAYM TGPPGQPLRA GASVIDIMSG LFGALGVITA
LHERAQDGRG RLVQSGLFET AAFVMGHHMA YAALTKTPVP PMPARVSAWS VYRTFTSADG
QQIFIGITSD KHWRQFCMAF GREDLLDDPR LATNNQRINE RERLLPLLEQ FFVSLSSDEI
LRRCEQAGIP FAPVARPEDL FTDPHLLQSN ILVEVELPGS VHTRLPRLPM LLDGNHCHSD
QSLPPVGAHT GEVLAELGYT DAEMAALSRA GVIVMTNGGS
|
|---|
| |