Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_3489 |
Symbol | |
ID | 5540988 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 4552145 |
End bp | 4555264 |
Gene Length | 3120 bp |
Protein Length | 1039 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640895607 |
Product | WD-40 repeat-containing serine/threonin protein kinase |
Protein accession | YP_001433557 |
Protein GI | 156743428 |
COG category | [R] General function prediction only |
COG ID | [COG2319] FOG: WD40 repeat |
TIGRFAM ID | |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.261998 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGTTCAG GCGAGCAAGT CATCCGTGAT CGCTACCGCG TGATCTACAC CGTCGATGAG CGTCCCGGCG TGAAAATCTA TCGTTGCCGC GATGATCAGA GCGGTGAGTT GTTGCTGGTA GCCGGGTTTG CGCCGCCCGA AGGGGCGCTC AGCGATCTGG ACATTCTTGC AAAGCAGATC GCGGCGGTGC GCCACGAGGC ACTGTTGCCG CTACGCGACC ATTTTGCCGA GGGTGCGCTC TACTACATGG TTTGCGCCGA TCCCGGCGGG CAGGATGTTG AACGAGCGAT ACGCGCGCGC GGCGGTCCGC TGCCGGAAAC CGACGTGCTG ACGCAGGCGA CCCGATTGCT CTTGCTGCTG GAACATCTGC ACAACCAGCG TCCGCCGTTG TTTCTGGGCG ATCTGGCGGT TGTCGATGTT TGGGTCAACG ACAAAGGCTC CTTTCTGATT ACTCCCTTTA CATTAGCGAC GCCAATCGGT CAGTCGCCGT CGCCGTACCG CGCGCCTGAA CTCTCGCGCC CCGATGCAGA GCCTACAACG GTGAGCGATG TGTATACCAT CGGCGCGCTG ATGTACCACG CACTGACCGG CTGGGCGCCG CCGACGCCCG CGCAACAGGA AGCCGGGATG CCGCTGGCGG GTCCGCGATC GCTCAATCCG CACATCTCGC CGCTGGTCGA GCAGGTGTTG CTGCGCGCTC TGCAATTGCG CCCGGTCAAT CGGTTTCAGC AGGCGCGCGA AATGCGCATT GCGCTCGAAA CCGCGCAGAT GATGGGCGGA CGTTCGCTTG GTCTTGGTCC TGATGTGCTG ACGCACGCAA CGCCATCCCC TCCTTATGAA GAACAGCCGC AGCAAACGGC AGAGAATGTC GTGCATGCGG CACCGGGCAT TGCGCCGCCC GCGGCGCCAG CGCCTGTTCC CGTGGCTTCG GTTGCTCCAC CGCCTGCAGC GCCGGCGCCC TATCCGCCGC CAGGGTATCC AACCGGCTAT GCGCCTGCTC CCCCACGGCA GGGTTTGAGC ACCGGCTGTC TCGTCACTTC TGCGGTGCTG CTGACCGTTG CTGCGATTGG GGTCTGTCTG GCGATTGCGG TCTTTCTGCC GGGCAGTCCG CTGCGCCAGA TGCTCGGCAT GAGCGGCGCC GCCGCTGCGC CAACATTGGC GCCAACGGAA GCGTCACCCG CAGCAACGGT GGCGCCGACT GCAACGAGCG CTGCGAACGT GGAACCGACC GTCCCGCCCC CTACGCCAAT ACCTGCCAAT GGATCATCTG CGCCTGGACC GGATGCTATC TCGCCACAGA ATGTCACGGC CATCACAGCA ACACGCCAGC TGTCCATGTC GGTATTTGGT CCTGTCGCTT ACTCGCCTGA TGGACGGCTG CTCGCCGTGG GGATAAGCGA AGCGGTCAGC CTGCATGATG CTACAACGCT CGATGACCTT GGAACCTGGT TTGACCACAC GGGCAAAATC ACATCACTCG CCTGGTCTGC CGACAGCACC TTGCTGGCGT CGGGCGCCAG CGACGATAAC GAAATTCGCA TATGGGACGT ATCGACCGGA CGGGTGGTTC GGCGTCTGAG CGGTCATACC GGCTGGATTC GCAGCATCGC CTTCGCTCCC AATGGCACGC TGCTAGCATC GGGGAGCACC GATCAAACAG TGCGTATATG GGATGCCGCA ACCGGTCAAC TGCTGGCGAC CCTGAGCGGA CACACCGGCT TCATTGGCGG TGTGGTCTTT TCCCCTGACA GCACGACGCT GGCATCCGCC TCGCGTGATG GCAGCGTGCG CCTCTGGGAC GTGGCATCCG GGCGTGAAAT CAGTGGCTTC AATTTTCGCA CTCCGCTCGA CCCGGACACC AACCTGCGCT ACTGGGCGAC CGGTGTCGCG TTTTCGCCTG ACGGCAAGGC GCTGGCAGTC GGATCGACCG AGGGGGTCGT CTATCTGCTC GATGCCGCCA CCGGTCAGGT CATTCATCAG TTGCGCGGTC ATACGAACTG GATCGTCATT CGCGGACTGG CGTTCGCTCC TGATGGAAAG ACCCTCTACT CAGCCGGGCT GGACGCAACT GTGCGCATAT GGGATGTGGA ACGCGGCGTG CAGACCGGTG TACTCGATGT TCACCGTCTC GACATTTTCA GCATTGCTAT CAGTCCGAAT GGTGAGCGCC TGGCGTCGGT CAGCGATCAG GAAGGGCGCA TGATCGTCTG GGACCTGACA CAGCAGCGCC CCGACATGAA CCTGCGGATC GGGCTGGGAT TGGTAACCTC GCTCGTCTTC TCACCCGATA GTGAGGTACT TGGCGCCGTC GGGTACAATG GCATCATTCA GTTGCGGTTG CTGGCGAATG ATCAAATCCG TCAGTTTGCA GGCTCTTCCA CGTCGGTGCA ATCACTGGCA TTCCTGCCCA ATGGTCGTCT GGCAACGATT ACCGAGCAGG ATACGGTGGT TATCCTGGAT TTTCTGCGCG AAACATCCAG CGATCTGACC GGATCGACCG GCGATCCGCT CTGCATTGCT GCCGATCCGG GTGGAAAAGT GGTTGCCGCC GGCGCAAACG ATGGCACGGT GGCGATCTGG AATGGCGCCG ATGGTCAGTT CCTCCGGTCG CTCAAGACCG ATCTCCCGGC GGTGTTTCTG GTGGCGGTCA GCGATGATGG GGCATTCGTG GCTGCTGCCG GCACGCCGAA TGATCCACGC ATCGAAATCT GGCGTGTCGC CGATGGGCAG CGCGTCCAGA CGTTGAGCGG CATGCAAAAC TCCATCACCA GCATTGCGTT CCAACCGAGA GGGACGTTGT TTGCAGCAAC GGGGACCGAT GGTGTGCTGC GTATGTGGAA TTATCGCACG GGCGCTTCGG AGCGAAATAT TAAGGCTGCG CCGGAAAATG GTTGGTTTAC TGCACTGGCA TTCTCTCCCG ATGGCGCAAT CCTTGCGACC GGCACACCCA CCGGCGTGGT GCAGTTCTGG AATCCGGCGA ACGGCGCAGA GATGGCGCAG GTTCAGCAGC AATTCGGCGT GCTGGCGCTG ACGTTCAGCC CTGATGGCGC ACAACTCGCC GCCGCCGGTC GTGATGCGGG CGTGACGCTT TATCGGGCTG TGCGCAGTGG TTCATCGTAG
|
Protein sequence | MSSGEQVIRD RYRVIYTVDE RPGVKIYRCR DDQSGELLLV AGFAPPEGAL SDLDILAKQI AAVRHEALLP LRDHFAEGAL YYMVCADPGG QDVERAIRAR GGPLPETDVL TQATRLLLLL EHLHNQRPPL FLGDLAVVDV WVNDKGSFLI TPFTLATPIG QSPSPYRAPE LSRPDAEPTT VSDVYTIGAL MYHALTGWAP PTPAQQEAGM PLAGPRSLNP HISPLVEQVL LRALQLRPVN RFQQAREMRI ALETAQMMGG RSLGLGPDVL THATPSPPYE EQPQQTAENV VHAAPGIAPP AAPAPVPVAS VAPPPAAPAP YPPPGYPTGY APAPPRQGLS TGCLVTSAVL LTVAAIGVCL AIAVFLPGSP LRQMLGMSGA AAAPTLAPTE ASPAATVAPT ATSAANVEPT VPPPTPIPAN GSSAPGPDAI SPQNVTAITA TRQLSMSVFG PVAYSPDGRL LAVGISEAVS LHDATTLDDL GTWFDHTGKI TSLAWSADST LLASGASDDN EIRIWDVSTG RVVRRLSGHT GWIRSIAFAP NGTLLASGST DQTVRIWDAA TGQLLATLSG HTGFIGGVVF SPDSTTLASA SRDGSVRLWD VASGREISGF NFRTPLDPDT NLRYWATGVA FSPDGKALAV GSTEGVVYLL DAATGQVIHQ LRGHTNWIVI RGLAFAPDGK TLYSAGLDAT VRIWDVERGV QTGVLDVHRL DIFSIAISPN GERLASVSDQ EGRMIVWDLT QQRPDMNLRI GLGLVTSLVF SPDSEVLGAV GYNGIIQLRL LANDQIRQFA GSSTSVQSLA FLPNGRLATI TEQDTVVILD FLRETSSDLT GSTGDPLCIA ADPGGKVVAA GANDGTVAIW NGADGQFLRS LKTDLPAVFL VAVSDDGAFV AAAGTPNDPR IEIWRVADGQ RVQTLSGMQN SITSIAFQPR GTLFAATGTD GVLRMWNYRT GASERNIKAA PENGWFTALA FSPDGAILAT GTPTGVVQFW NPANGAEMAQ VQQQFGVLAL TFSPDGAQLA AAGRDAGVTL YRAVRSGSS
|
| |