Gene Rcas_3487 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_3487 
Symbol 
ID5540986 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp4549593 
End bp4550156 
Gene Length564 bp 
Protein Length187 aa 
Translation table11 
GC content60% 
IMG OID640895605 
Productalkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen 
Protein accessionYP_001433555 
Protein GI156743426 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG1225] Peroxiredoxin 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCGCAA CATCAGAAAC ATCGCTGACG TTGACGTTGG GCGCCATTGC GCCCGATTTC 
ACCCTGACTG ATACGGTATC GGGCAAAACG ATGTCGCTGA GCGATCTGAA ATCGCCCAAG
GCGACGGTTA TTCTGTTCAT CTGCAATCAC TGCCCGTATG TCAAGCATGT TGATCGGGCG
CTTGTTCGCC TGGCGCAGGA CTATATGCCG CAGGGGGTGT CGTTCATCGC TATCAGTTCT
AATGATCCAA TCCAGTACCC GGAAGACTCG CCGGAGAGGA TGCGCGAGGA GGCGCTGCGC
GTCGGCTATC CCTTCCCCTA TCTGTTCGAT GAGACACAGG ATGTCGCGCG CGCGTATGGC
GCCGCCTGCA CCCCCGACAC TTTCATCTTC GACGGCGACC TGCGTCTTGT CTACCGCGGA
CAACTCGACG ATACCCGTCC GAGCAGCGGC AGAGAGGCGA CCGCCGCCGA TGTGCGCGCC
GCGCTCGATG CTATTCTGTC CGGTCAACCG GTGAACGCAG TGCAGAAGCC GAGCGTCGGG
TGCAGTATCA AGTGGAAGCG GTAG
 
Protein sequence
MPATSETSLT LTLGAIAPDF TLTDTVSGKT MSLSDLKSPK ATVILFICNH CPYVKHVDRA 
LVRLAQDYMP QGVSFIAISS NDPIQYPEDS PERMREEALR VGYPFPYLFD ETQDVARAYG
AACTPDTFIF DGDLRLVYRG QLDDTRPSSG REATAADVRA ALDAILSGQP VNAVQKPSVG
CSIKWKR