| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3471 |
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| Symbol | |
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| ID | 5540970 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 4531309 |
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| End bp | 4532391 |
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| Gene Length | 1083 bp |
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| Protein Length | 360 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640895589 |
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| Product | 3-isopropylmalate dehydrogenase |
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| Protein accession | YP_001433539 |
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| Protein GI | 156743410 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
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| COG ID | [COG0473] Isocitrate/isopropylmalate dehydrogenase |
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| TIGRFAM ID | [TIGR00169] 3-isopropylmalate dehydrogenase
[TIGR02088] isopropylmalate/isohomocitrate dehydrogenases |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.023683 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGCGC CACCGTTCAC CATTCTTGTC ATACCCGGCG ATGGCATCGG GCGTGAGGTC
ATTCCGGCAG CCGTCGCTGT GCTTCAGGCG ACCAATCTGC CGTTGCAGTT CGTGGAAGCC
GACGCGGGGT GGGACTGTTT CCAGCGCTGC GGTGACGCAT TGCCGCATGA AACGCTCGAC
GCAGCGCGCG CGGCAGATGC CGTGCTGTTT GGCGCCGTCG CGTCTCCGAG TTACCCGGTT
GCCGGGTACC GCAGCCCGAT TGTGCGATTG CGCCGCGAAC TCGATCTGTA CGCCAATATC
CGTCCGGTCT TCGATGATCC GCCTCCTGGC GATCCGCGCG CGCGCCGGGT CGATCTGGCG
GTGGTGCGCG AAAATACCGA AGGGCTGTAC GCCGGGCGCG AACGGGTCGA AGATGGCGGC
GCAACTGCGA TTGCCGAGCG CGTGATTACC CGGCGCGCCA GCGAACGAAT TGCGCGGGTC
GCCTTTGAAC TGGCGCGCGC TCGTCGTGCT GCGCGCCGCG CCGACGATGC GCCGCCGGGA
AGAGTGACCA TTGTCCACAA GGCGAACGTT CTGCGCGAAA CCTGTGGATT GTTCCGCACC
ATCGCTCTGG ACGTCGCACA GGCGTACCCC GACGTGCAGG CGGACGAAAT GCTCGTCGAT
GCCTGCGCGC TGCACCTGGC GACGCGCCCG GAACGCTTCG ATGTGATTGT CACCACGAAC
CTGTTCGGTG ATATCCTGTC GGATGTCGCC TGCGCCTGGG GTGGCGGGTT GGGTCTCGCG
CCATCGGCGA ACCTGGGTGA ACGACACGCG CTGTTCGAAC CGGTCCACGG CGCCGCGCCC
GACATCGCGG GGAAAGGAAT CGCCAATCCG CTTGCGGCGA TCGGGTGCGC TGCGTTATTG
CTCGACCATC TTGCCAGCCG CGCGTCGCCC GATACTGCGT CTGCCATCCG CGCCTGGAGC
GAACGCATCA GGCGCGCCGT TCGCCACGTG CGCGCCGTCG GACCGCACAC ACCCGACTTA
GGAGGCGACG CTGCCACATC TGAGACGACT GCCGCAGTCA TTGCCCATAT GCTCACGTTG
TAA
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| Protein sequence | MSAPPFTILV IPGDGIGREV IPAAVAVLQA TNLPLQFVEA DAGWDCFQRC GDALPHETLD
AARAADAVLF GAVASPSYPV AGYRSPIVRL RRELDLYANI RPVFDDPPPG DPRARRVDLA
VVRENTEGLY AGRERVEDGG ATAIAERVIT RRASERIARV AFELARARRA ARRADDAPPG
RVTIVHKANV LRETCGLFRT IALDVAQAYP DVQADEMLVD ACALHLATRP ERFDVIVTTN
LFGDILSDVA CAWGGGLGLA PSANLGERHA LFEPVHGAAP DIAGKGIANP LAAIGCAALL
LDHLASRASP DTASAIRAWS ERIRRAVRHV RAVGPHTPDL GGDAATSETT AAVIAHMLTL
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