Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_3457 |
Symbol | |
ID | 5540956 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 4516408 |
End bp | 4517205 |
Gene Length | 798 bp |
Protein Length | 265 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640895575 |
Product | DeoR family transcriptional regulator |
Protein accession | YP_001433525 |
Protein GI | 156743396 |
COG category | [G] Carbohydrate transport and metabolism [K] Transcription |
COG ID | [COG1349] Transcriptional regulators of sugar metabolism |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.0252866 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCACAAGC CCATGACCGA TCATAGTGCC GAAGCGCTTC CGCCCGAAGT GCGGCGCGAC CAGATCATGG CGCTGCTTCA GCGCCACGGG CAGATCTCGG TCAAATGGTG CGCCGAACAG TTGGGCGTCT CCGAGGTGAC GATTCGCAGC GATTTTGCGC TGCTCGAACG GGAGGGCATG CTGCGGCGCA TATGGGGCGG CGCCGTGCTC GACCGGCCAT TGTGGCCGGA GGGGAGTTTT GCCTCGCGTC TGAAGGTGCG CGTGGAAGAA AAGGAGCGCA TCGCGCGCGC TGCGGCGCGC CTGATCAACG ACGGTGATAC GGTCATGCTC GACGCCAGTA CGACCGCCTA TGCCATTGCC CGGCAGATCG CCGACCGGCG CAACCTCACC GTCATCACCA ACGGCATGCA CCTTGCCCTG TCGCTTGGCG CTCATCCTTC CATCACCACG ATTGTTATCG GTGGTCAGGT GCGCGGTGAC ACTGGTTCGC TGACCGGCAC GCTGGCGGAG GAGATGTTGC AGCGTCTGCA CGCCGACAAA GGGTTTTTCT CGGCGCGTGG ATTGACCCTG GCAAAGGGAC TGACCGAAAG TTCCATCCCG GAAGGATTGC TCAAGGCGGC GATGGTGCGT CACGTTGATC AAGTCATTGC CGTGCTCGAC AGCAGCAAAC TAGGGGTCAG TTCACTGACG AGTTTCTGCC CGGTCGAGGC GATCCACCGA CTGATCACGG CTGGAGCGGA TGCTGCTGAA CGGAGCGCTC CGTTCGGCGA TCTCTTTCCT GTAATGATTG CGGGGTAA
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Protein sequence | MHKPMTDHSA EALPPEVRRD QIMALLQRHG QISVKWCAEQ LGVSEVTIRS DFALLEREGM LRRIWGGAVL DRPLWPEGSF ASRLKVRVEE KERIARAAAR LINDGDTVML DASTTAYAIA RQIADRRNLT VITNGMHLAL SLGAHPSITT IVIGGQVRGD TGSLTGTLAE EMLQRLHADK GFFSARGLTL AKGLTESSIP EGLLKAAMVR HVDQVIAVLD SSKLGVSSLT SFCPVEAIHR LITAGADAAE RSAPFGDLFP VMIAG
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