Gene Rcas_3457 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_3457 
Symbol 
ID5540956 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp4516408 
End bp4517205 
Gene Length798 bp 
Protein Length265 aa 
Translation table11 
GC content62% 
IMG OID640895575 
ProductDeoR family transcriptional regulator 
Protein accessionYP_001433525 
Protein GI156743396 
COG category[G] Carbohydrate transport and metabolism
[K] Transcription 
COG ID[COG1349] Transcriptional regulators of sugar metabolism 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.0252866 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACAAGC CCATGACCGA TCATAGTGCC GAAGCGCTTC CGCCCGAAGT GCGGCGCGAC 
CAGATCATGG CGCTGCTTCA GCGCCACGGG CAGATCTCGG TCAAATGGTG CGCCGAACAG
TTGGGCGTCT CCGAGGTGAC GATTCGCAGC GATTTTGCGC TGCTCGAACG GGAGGGCATG
CTGCGGCGCA TATGGGGCGG CGCCGTGCTC GACCGGCCAT TGTGGCCGGA GGGGAGTTTT
GCCTCGCGTC TGAAGGTGCG CGTGGAAGAA AAGGAGCGCA TCGCGCGCGC TGCGGCGCGC
CTGATCAACG ACGGTGATAC GGTCATGCTC GACGCCAGTA CGACCGCCTA TGCCATTGCC
CGGCAGATCG CCGACCGGCG CAACCTCACC GTCATCACCA ACGGCATGCA CCTTGCCCTG
TCGCTTGGCG CTCATCCTTC CATCACCACG ATTGTTATCG GTGGTCAGGT GCGCGGTGAC
ACTGGTTCGC TGACCGGCAC GCTGGCGGAG GAGATGTTGC AGCGTCTGCA CGCCGACAAA
GGGTTTTTCT CGGCGCGTGG ATTGACCCTG GCAAAGGGAC TGACCGAAAG TTCCATCCCG
GAAGGATTGC TCAAGGCGGC GATGGTGCGT CACGTTGATC AAGTCATTGC CGTGCTCGAC
AGCAGCAAAC TAGGGGTCAG TTCACTGACG AGTTTCTGCC CGGTCGAGGC GATCCACCGA
CTGATCACGG CTGGAGCGGA TGCTGCTGAA CGGAGCGCTC CGTTCGGCGA TCTCTTTCCT
GTAATGATTG CGGGGTAA
 
Protein sequence
MHKPMTDHSA EALPPEVRRD QIMALLQRHG QISVKWCAEQ LGVSEVTIRS DFALLEREGM 
LRRIWGGAVL DRPLWPEGSF ASRLKVRVEE KERIARAAAR LINDGDTVML DASTTAYAIA
RQIADRRNLT VITNGMHLAL SLGAHPSITT IVIGGQVRGD TGSLTGTLAE EMLQRLHADK
GFFSARGLTL AKGLTESSIP EGLLKAAMVR HVDQVIAVLD SSKLGVSSLT SFCPVEAIHR
LITAGADAAE RSAPFGDLFP VMIAG