| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3448 |
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| Symbol | |
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| ID | 5540947 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 4504301 |
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| End bp | 4505194 |
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| Gene Length | 894 bp |
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| Protein Length | 297 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640895566 |
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| Product | histone deacetylase superfamily protein |
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| Protein accession | YP_001433516 |
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| Protein GI | 156743387 |
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| COG category | [B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.509704 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACTCT TCTACTCCGA CTCCTTCGTT CTTCCGCTTC CCGAAGGACA CCGTTTCCCC
ATCGCCAAAT ACGCCTTGCT GCGCGAGCGG GCGGCGGCTG AGGGTTTGGG TGACCTGATT
CTCCCCGAAG CCGCTGATGA CCGCACTCTT CTGCGCGCGC ACACCGCCGA TTACCTGCAT
CGCATAAAAA CCGGCGCCAT AAGCGACCGC GAGATGCGCC AGATCGGATT TCCCTGGTCG
CCGCACCTCA TCGAGCGCTC GCGGCGCTCG GTCGGAGCGA CGATTGCCGC CTGTCGCGCA
GCGTTGAGTG GCGACGGCTT CGCGGCAAAC CTGGCAGGCG GCACCCACCA CGCCTTTGCC
GATCATGGCG AAGGGTACTG CGTCTTCAAC GACAGCGTGA TCGCAGCGCG CGCTATGCAG
GCGGAAGGTC GCGTCCGGCG GGTTGTTATC ATCGATTGTG ATGTGCACCA GGGGAACGGA
ATCGCCGCCA TCCTCACCGG TGACGACACC ATCTTCTCGT TTTCCATCCA TGGTTCCAGG
AACTACCCGT TCCGCAAAGA GCGCAGTGAC CTCGATATTG CTCTGGAGGA CGGGACCGGC
GACACAGGGT ATCTGGCGGC GCTGGAAACG GGGTTGCGCC AGGCTGTCGA ACGTAGTCGC
GCCGACCTGG CGATCTACCT GGCGGGCGCC GATCCCTATG AGCACGATCG GCTTGGTCGC
CTGAGCCTGA CGAAAGCCGG TCTGCTGGAG CGTGACCGGA TGGTGTTCGA GGTCTGTCGG
AACGCCGGCA TCCCGGTCGC AATCACGATG GCTGGCGGGT ATGCCCGCGC GATTGCCGAC
ACCGTAGACA TTCATGCCGC CACACTGCGC CTGGCGGCTT CGATGAGCGG TTGA
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| Protein sequence | MKLFYSDSFV LPLPEGHRFP IAKYALLRER AAAEGLGDLI LPEAADDRTL LRAHTADYLH
RIKTGAISDR EMRQIGFPWS PHLIERSRRS VGATIAACRA ALSGDGFAAN LAGGTHHAFA
DHGEGYCVFN DSVIAARAMQ AEGRVRRVVI IDCDVHQGNG IAAILTGDDT IFSFSIHGSR
NYPFRKERSD LDIALEDGTG DTGYLAALET GLRQAVERSR ADLAIYLAGA DPYEHDRLGR
LSLTKAGLLE RDRMVFEVCR NAGIPVAITM AGGYARAIAD TVDIHAATLR LAASMSG
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