| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3446 |
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| Symbol | |
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| ID | 5540945 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 4501580 |
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| End bp | 4503349 |
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| Gene Length | 1770 bp |
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| Protein Length | 589 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640895564 |
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| Product | SCP-like extracellular |
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| Protein accession | YP_001433514 |
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| Protein GI | 156743385 |
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| COG category | [S] Function unknown |
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| COG ID | [COG2340] Uncharacterized protein with SCP/PR1 domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.118078 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGAACT GGCAGAGATT GGCGCTTATA AGCATTGCGC TTTTCGGATG CTTTGTTCCG
GTGCAGAGCG CGCCTCCTAC TCCGGCGCAA ACCCCGGATG TGCGGCATAA CGAAGCGCAA
ACAGTCTATC TCAGCAACCT GGCGCGACGC GCCAATGGCA TCCCTCCGTT GCGCTGGAAC
CGCCAACTCA CTGCGGCTGC ACGCTGGTTC GCGTGGGATT CGACCGAGAA CCGTCCGGGA
TGGTACTGTG GTCACCAGGA CACCAACGGA AACTGGCCCG ACTATCGTGC GCGCGCTTTT
GGATACCTGG CCCTCGCAGG CGCGGAAAAT GCCTTCTGCG GATATGTCAC CCCCGCAGGA
GCGGTCCAGG GATGGATGAA CAGTCCGGGT CATCGCGCGA ATCTGCTCGA TCCCGTTTCT
CGCGAGATTG GATTGGGATA CTACCGGCGT TCCGGCGATG GACGAGGTTA CATTGCACAA
ATGTTTGGCG CCGATCCATC CTACGCGCCG GTCATTATTG AGAACGAAGC CCTCTCGACA
CCCCTTGCCC GGGTCAATCT CTATATCTAC AATCGCGCGG AGCAGAACGG CTTTGCGGGG
CTGGGTCCGG CGACGCAGAT GATGATCAGC GCTGATCCCT GCTTTGCCGA CGGCGTCTGG
ATGCCATTTT CCAACGAGAC AACCTGGAAT CTGGAAGATG GACAGGGCTG GCGAACCGTC
TACGTTAAAA CCCGCGATCC GCTTAACCGC ACCGCCACGG TGAGTGACAC TATCTACCTG
GGGGGAACGG CGCCGCTTCA GGAACTCGAT GACGAATACC TGAGCACAAC GCAGCCTTCT
GTAACACTGT ATCGTCTGGA TCAGAGTGGA TGGCCAATGG TGCAATTGAG CCTGGGATGG
ATTGCTGATG ATGCCTACCC GACGTTTAGC AGGTTGTGGG GGAACGGCGA GCGCGTCACT
GACCCGGACG CCTGGGGCGG CACTGCATAC CGACTTGCAA CAAGCAGCGG CGAGTCATCT
GCATGGGTAT GGGACACTTC CTTTATCAAG GATACGCCGC TCGTCGCCTA TTTCCGCATT
AAGGTTAGCA GCAATGAATC AAGCAGCGAA GTAGCGCAAC TGACGGTCAT AGGCGGCGGG
ACGGAATACG GTCCGCTGCG GTTGCGCGGC GTTGAATTTT CCGCGCCCAA CCGGTATCAG
GAATTTGCGC TGCCATTTAC GTTTCACTCA AATCCCAACG AACCTTTCCT GATCTTTCAA
ATCCGGCGCA GCGGCGCTGC TGATGTGTTT GTCGATGCGA TCACCATCTT CAGCGCGTCT
CAACCGGCGA CCTCTCCGCT CATCTGGCAG GTTCCCGGGG GAAACTACCG CGGGCAGGGG
GTGTGGGCGC GTTTCACGGA TGGCGCGCGT TTCTCCGAGA TGACGGAAGC GGCGACGATG
CCCGCCCGTC TGAGTGTTAC ACCGGCGGGT CTGCGGTTCC TGGCTCAGCG CAGCGGCGCT
CCACCGTTGT CGGCACACCT GCGTGTTGCT GCCACCTGCG CACCTCCCGG CTGGCAGGCG
ACACAGGATG TTCCCTGGCT CCAGACCGAA ATTGTCGGCA GCGCAGTGCG AGTCAGGGCC
AACCAATCTG GATTGAACAA CGGCGTCTAC ACCGGCAGTA TCACCATCTC AGCGCCAGAT
GCTGGCGTCG CCCCAATTGT CGTTCCGGTC GAACTGATCG TTGTCGATCA ACTGTTTTCT
GTGCATCTGC CGCTCATCAA CAAAAATTAA
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| Protein sequence | MRNWQRLALI SIALFGCFVP VQSAPPTPAQ TPDVRHNEAQ TVYLSNLARR ANGIPPLRWN
RQLTAAARWF AWDSTENRPG WYCGHQDTNG NWPDYRARAF GYLALAGAEN AFCGYVTPAG
AVQGWMNSPG HRANLLDPVS REIGLGYYRR SGDGRGYIAQ MFGADPSYAP VIIENEALST
PLARVNLYIY NRAEQNGFAG LGPATQMMIS ADPCFADGVW MPFSNETTWN LEDGQGWRTV
YVKTRDPLNR TATVSDTIYL GGTAPLQELD DEYLSTTQPS VTLYRLDQSG WPMVQLSLGW
IADDAYPTFS RLWGNGERVT DPDAWGGTAY RLATSSGESS AWVWDTSFIK DTPLVAYFRI
KVSSNESSSE VAQLTVIGGG TEYGPLRLRG VEFSAPNRYQ EFALPFTFHS NPNEPFLIFQ
IRRSGAADVF VDAITIFSAS QPATSPLIWQ VPGGNYRGQG VWARFTDGAR FSEMTEAATM
PARLSVTPAG LRFLAQRSGA PPLSAHLRVA ATCAPPGWQA TQDVPWLQTE IVGSAVRVRA
NQSGLNNGVY TGSITISAPD AGVAPIVVPV ELIVVDQLFS VHLPLINKN
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