| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3429 |
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| Symbol | |
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| ID | 5540928 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 4468782 |
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| End bp | 4471445 |
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| Gene Length | 2664 bp |
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| Protein Length | 887 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640895547 |
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| Product | D-lactate dehydrogenase (cytochrome) |
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| Protein accession | YP_001433497 |
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| Protein GI | 156743368 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0277] FAD/FMN-containing dehydrogenases |
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| TIGRFAM ID | [TIGR00387] glycolate oxidase, subunit GlcD |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0215799 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.000769346 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGACCACTG CTGACACTCA GGCGCTGCTC GCCGATCTTG CCGCGCGTCT TGGACCGGAT
CGGGTTATTG TTGATCCCGC GCAACTCATT ACTTATGAAG TCGATGGCAG TTTTGAGCGC
GGCCATCCCG ACGGGGTCGT CTTCCCACGC TCGGTTAATG AAGTGGTCGA ACTGGTGCGC
TGGGCAGCCG AACAGCGCGT GCCCTTGATT GCGCGCGGTT CAGGCACCGG TCTGGCCGGC
GGTGCAGTCC CCGAAATCGG CGGAGTGGTC GTGCAACTCG GTCTGATGAA TCGCGTGTTG
GAACTCGACC TGATTGGACG CAGCGCGGTT GTAGAGGCAG GAGTGGTCAA CCTGCTCTTC
GATAACCAGG TGCGCAAACA TGGACTGTTC TTCCCTCCTG ACCCTTCGAG TCAGCGCACA
GCGACAATTG GCGGAAATAT CGGCACGAAT GCGGGTGGAC CGCACTGCTT CAAGTATGGT
GTGACGAGCA ACTACGTGAC AGGGCTAGAG GTTGTGCTAA GCGATGGGCG GATCATCCAT
ACCGGCGGAC GGGCATTCGA TATTCCGGCA TACGACCTGA CGGCGCTCTT TGTCGGCAGC
GAAGGCACGC TTGGCATCAT CACACGCGCT GATCTGCGGG TGCTCCGTGA TCCGCCGGCT
GTGCGCACCA TGCTGGCAGC CTTCGATAGC GTCGAACGCG CCGGTGAGGC AGTCTCCACC
ATCATTGCAC GCGGACTGAT ACCGGCAACA ATGGAAATGA TGGATTCGAG CATTGTGCGC
ATCGTCGAAG AGTACGCCCA TCCAGGGCTG CCGCTCGACG CCGGCGCGGT GCTCATCATC
GAAGTCGATG GGTATCCTGA AAGCGTCGGA CCGCAGATCG CCGAGATCGA GGCGATCCTC
CGCGAGTGCA GTGTGCGCGA GATGCGCGTG GCGCAGAGTG CGGCGGAACG CGACCGCATC
TGGTTCGCGC GCAAAAGTGC AGCCGGAGCA ATGGCGCGGC TGGCGCCAGC ATACTATCTG
GTTGATGGCA CGGTACCGCG CAGCAAACTG GCAGAAACCC TTGCGACCAT CAATCAGATC
ATCGAAGCCG ACGGATTCCG CACCGGTCAC GTATTCCACG CTGGCGACGG CAATCTGCAT
CCCCTTGTCC TGATCGATGA CCCGTCGGAT CGGACGTTGA TTGCGCGCGT TCTCGAAACC
GGGCGCAAAA TCCTGGCGGC ATGCGTCGCT GCCGGCGGGA GCATCACCGG CGAGCACGGC
GTTGGTATCG AGAAACGCGC ATTTATGTCG CTCATGTACG GGCCCACCGA ACTCTCGTTG
ATGTGGGACG TGAAGGAGAT GTTCGATCCG GTGGAGATCA TGAATACCGG CAAGGTTCTG
CCGCCGCGTG ACGAGATTGT CGCTCCGGCG CACCATGGGC GTCCACCAGG CGCCGCGCCG
GTGACACTCC AGGCGGAAAC AACGACCATG TCGTCTGCTG GACTCCCGAT TGCAACGCCG
ACGAGCCCAG AAGAAGCGGC GGACACATTG CGCGCGTTTA TCGGGGGCGG GAAGAGTGTG
CGCATTCGAG GAGGTGGAAC GAAGTCAGCA CTGTTGCCGC CCGCCGATGT GATGCTGTCC
ACCGAAGATC TGTCCGGCAT TTGCGATCTT GCCGTGGAAG ACTTGTATGT GACCGTCGGC
GCCGGAACGC GCCTGGCAGA TCTCCAGGCG CTGTTGCAGG GTCACGGGAT GTGGGCGCCG
CTGGCATCAC CCTGGCAGGC GGCAACCATC GGCGGCATCA TTGCCGCGAA CGCAAATGCG
CCGCTCCGCA TGCGCTATGG GAGTGTCCGC GACGTGCTGC TGGCAGCGAC CATCGCCCTT
CCCGATGGGC GCGTGGCGCG CATTGGGCGG CCAGTGGTGA AGAATGTGGC AGGGTATGAT
CTGCACAAAG TGCAGGTGGG TGCGTATGGA ACGCTGGGGT TGCTCTGTGA AGTGACGTTG
AAACTTGCGC CGCTGCCGCG CGCGCGCGCG ACGGTGATCG CTATGCCGCG ACGCATTGCG
CAGGCGCTCG ACGTTGGCGC AACGCTGACG CAGCAGTCCC TGATTGCATC AGCGGCGCTG
GCGCTCGAAA TCGCCGATGG CGGCGGTTGG CTGCCACCAT TGCCGGTTGC GCTGGATCGC
CGTCCGACGA CGCTCCTCGT CTACACTGCC GAAGGGCTGG CAGAGGATGT GCGAGCGGAG
ATTGCCGCTG TGCGCACCGT GCTGCGCAGC GCCGATATTT CGGCGCTTCA GATCGACAGT
TCCGGCAGCG ATCTGTGGGG CGCCTTTCTC AGCGCAGCGC AGCCGGACGA TCTGCTGATT
CGGATTGGCA TTGCGCCGAA AGACATCAGG GGCTTCATGC AACGCGCCGG TTTTGGTGGC
AGAGAGTCGT ACCTGACGGA TCTGGCAGCG GGGCAGGTCT ATGTGCGGGC GCCGGCGCCG
CACCCAGACG ATGCGCACCG CATCCTGGAT CGCCTGCGCA CTGCCGCGCG AACGCTCAAT
GGTTACGCCG TCGTGCTGGC GGCGCCGGCG CGCGCGCGCC TCGACCCGTG GGGATACACA
CCCGATGCCC TCGACCGGAT GCGCGAAATG CGTCGGCGCT GGGGCGCCGA CGGTTTGCTC
AATCCTGGAG CGTTTATCGT CTGA
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| Protein sequence | MTTADTQALL ADLAARLGPD RVIVDPAQLI TYEVDGSFER GHPDGVVFPR SVNEVVELVR
WAAEQRVPLI ARGSGTGLAG GAVPEIGGVV VQLGLMNRVL ELDLIGRSAV VEAGVVNLLF
DNQVRKHGLF FPPDPSSQRT ATIGGNIGTN AGGPHCFKYG VTSNYVTGLE VVLSDGRIIH
TGGRAFDIPA YDLTALFVGS EGTLGIITRA DLRVLRDPPA VRTMLAAFDS VERAGEAVST
IIARGLIPAT MEMMDSSIVR IVEEYAHPGL PLDAGAVLII EVDGYPESVG PQIAEIEAIL
RECSVREMRV AQSAAERDRI WFARKSAAGA MARLAPAYYL VDGTVPRSKL AETLATINQI
IEADGFRTGH VFHAGDGNLH PLVLIDDPSD RTLIARVLET GRKILAACVA AGGSITGEHG
VGIEKRAFMS LMYGPTELSL MWDVKEMFDP VEIMNTGKVL PPRDEIVAPA HHGRPPGAAP
VTLQAETTTM SSAGLPIATP TSPEEAADTL RAFIGGGKSV RIRGGGTKSA LLPPADVMLS
TEDLSGICDL AVEDLYVTVG AGTRLADLQA LLQGHGMWAP LASPWQAATI GGIIAANANA
PLRMRYGSVR DVLLAATIAL PDGRVARIGR PVVKNVAGYD LHKVQVGAYG TLGLLCEVTL
KLAPLPRARA TVIAMPRRIA QALDVGATLT QQSLIASAAL ALEIADGGGW LPPLPVALDR
RPTTLLVYTA EGLAEDVRAE IAAVRTVLRS ADISALQIDS SGSDLWGAFL SAAQPDDLLI
RIGIAPKDIR GFMQRAGFGG RESYLTDLAA GQVYVRAPAP HPDDAHRILD RLRTAARTLN
GYAVVLAAPA RARLDPWGYT PDALDRMREM RRRWGADGLL NPGAFIV
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