Gene Rcas_3428 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_3428 
Symbol 
ID5540927 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp4467978 
End bp4468406 
Gene Length429 bp 
Protein Length142 aa 
Translation table11 
GC content59% 
IMG OID640895546 
Productpeptidylprolyl isomerase FKBP-type 
Protein accessionYP_001433496 
Protein GI156743367 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG1047] FKBP-type peptidyl-prolyl cis-trans isomerases 2 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0331608 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00203796 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCAACGG CACAAACTGG CGACACCGTG ACAGTGCACT ACACCGGCAC ACTGGAAGAT 
GGCACCGTCT TCGACAGTTC GCACGGTCGT GAACCGCTGG TGTTTACGCT GGGCAGCGGG
CAGGTCATCC AGGGATTCGA GGACGCAATC GTGGGCATGG AGGAAGGGGA GACACGCCGC
GCTGTGCTGA CGCCAGACCA GGCGTATGGC GAGTACCATG ACGAATTGGT CTTCTCGCTG
AGCCGCGACG AACTTCCACC GCAGATCGAT CCGGCAGTTG GCGAGCAGTA TCAGATGCGT
CGTCCTGATG GACAGACGTT CATCGTCACA GTGCGCGACG TGTCGCCGTC CGATGTGACC
TTCGACGCCA ATCATCCGCT GGCAGGCGCG ACATTGACGT TCGATATCGA ACTGGTGGCA
ATTGAATAA
 
Protein sequence
MATAQTGDTV TVHYTGTLED GTVFDSSHGR EPLVFTLGSG QVIQGFEDAI VGMEEGETRR 
AVLTPDQAYG EYHDELVFSL SRDELPPQID PAVGEQYQMR RPDGQTFIVT VRDVSPSDVT
FDANHPLAGA TLTFDIELVA IE