| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3395 |
|---|
| Symbol | |
|---|
| ID | 5540894 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 4427098 |
|---|
| End bp | 4428228 |
|---|
| Gene Length | 1131 bp |
|---|
| Protein Length | 376 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640895513 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001433463 |
|---|
| Protein GI | 156743334 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3064] Membrane protein involved in colicin uptake |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.317872 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCACA CCACGATCCA TACCCTGCCT GCGTCTGATA CGGCGCCTGC CGAGGACCCG
TTCCGCTACG GCTGGCGCTT CGTGCCCCGC CCGACTCCCG ACAACCCCCA CTATCTGGAA
CAGGTTCCGC TCACCCTCGA AGACGTCCTG CACCCTGAAA CGGGAGATTT CATCGCGCAC
AGCGACCGCC ACGAGACCGA CCGGATGTAC CTCACCGCCG TGCTGCGCGC CCGTCTGGAG
GAGGCGGGGG TCGCCATCGT CCTGAGCGAT GTGCGGATTG CGTGGGACAT CCCCGACCTG
CGCCCGCACG GACCGGATGT GATGGTCATT CCCGGCATCC GCGAACGGCA GGACTGGAGC
ACATTCGAGG TGGCGGTCGA AGGCGCGCGT CCGGCGCTGA TCATCGAGAT CACCTCGCCG
GAGACGCGCG AGAACGACCT GGAGCGCAAG GTGGAGCACT ACGCGCGGGC GGGGGTGGCG
CAGTACGTGA TTGTGGATGA CGCCGGAAAA GGTCGGGGGA AGCGGCGGCT GCGATTGCTC
GACTACCGGT TGGAGGCGGG GATGTACCGC CTGCATCCAT CGGATGCCGC AGGACGGGTG
CATCTGGCGA TTGCCGATGT ATGGCTGGGG GTGGAGGGCG ATCACGTCGT CTGCTACGAC
GACCATGGCG TGGCATTCGG CGACTATGCG ACGGTGGTGC GGCAGGCGGC GGACGCGGAA
GAACGAGCGC GGCTGGAAGC GCAGGCGCGG GAAGCCGAAG CGCAGGCGCG CGCTGCTGCG
GAAGCACAGG CGCGGCGCGA GGCGGAACGG GCGCAACGTG AAGCGCAGGC GCGGGAAGCC
GAAGCGCAGG CGCGGGCTGC TGCGGAAGAA CGAGCGCGGT TGGAAGCGCA GGCGCGGGAA
GCCGAAGCGC AGGCGCGGGC TGCTGCGGAA GAACGAGCGC GGTTGGAAGC GCAGGCGCGG
GAAGCCGAAG CGCAGGCGCG GGCTGCTGCG GAAGCACAGG CGCGGCGCGA GGCGCAGGCG
CGGGCTGCTG CGGAAGCACA GGCGCGACGC GAATCGCAAG CGCGCGCCGA AGTTGAAGCG
CGCCTGCGCG CCCTCGAAGA AGAACTTCGC CGGCTGCGCG GTGAAGGGTG A
|
|---|
| Protein sequence | MTHTTIHTLP ASDTAPAEDP FRYGWRFVPR PTPDNPHYLE QVPLTLEDVL HPETGDFIAH
SDRHETDRMY LTAVLRARLE EAGVAIVLSD VRIAWDIPDL RPHGPDVMVI PGIRERQDWS
TFEVAVEGAR PALIIEITSP ETRENDLERK VEHYARAGVA QYVIVDDAGK GRGKRRLRLL
DYRLEAGMYR LHPSDAAGRV HLAIADVWLG VEGDHVVCYD DHGVAFGDYA TVVRQAADAE
ERARLEAQAR EAEAQARAAA EAQARREAER AQREAQAREA EAQARAAAEE RARLEAQARE
AEAQARAAAE ERARLEAQAR EAEAQARAAA EAQARREAQA RAAAEAQARR ESQARAEVEA
RLRALEEELR RLRGEG
|
|---|
| |