Gene Rcas_3377 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_3377 
Symbol 
ID5540876 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp4406893 
End bp4407714 
Gene Length822 bp 
Protein Length273 aa 
Translation table11 
GC content59% 
IMG OID640895495 
Productalpha/beta hydrolase fold 
Protein accessionYP_001433445 
Protein GI156743316 
COG category[R] General function prediction only 
COG ID[COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)  
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTGAGA TACGGGTAAA CGGAGCGACC ATTTCCTACG AGGAACACGG AACCGGTCCT 
GAAACAATTG TGTTTGCACA CGGTTTGCTG TGGAGCGGAC GCATGTTCGA TCATCAGGTC
AACGCGCTCA AGGATCGGTA TCGGTGCATT ACCTTCGACT TTCGCGGGCA GGGGCAAAGC
GAAGTGACCG ACTCAGGATA CGACATGGAC ACCCTTACGA ACGATGCAGC GGCGCTGATC
GAAGCGCTGC ACGCCGCTCC CTGTCACTTC GTCGGTCTCT CGATGGGTGG GTTTGTCGGC
ATGCGACTGG CGATCCGCCG TCCTGATCTG ATCCGATCAC TCATTCTGCT GGAAACCTCA
GCCGACCCGG AACCACGCGA GAATGTGGGG CGGTACCGCC TGCTCAATTT CATTGCGCGC
TGGTTGGGGT TGCGATTGGT TGCCGATCAG GTGATGCCGA TCATGTTCGG CAAAACGTTT
CTGACCGATC CAAACCGCGC ACAGGAGCGA GCAATGTGGC GCAAACGGAT GACCGCCAAT
CACCGAATCG GCATCTCGCG CGCCGTGCGG GGCGTCATTG AGCGACAGGG GGTGTATGAG
CAGATCGACC GGATCACAGC GCCAACGCTC ATCATCGTCG GCGATCAGGA CGTAGCGACC
CCACCCGACA AAGCCCGACG CATATTCGAG CGCATCCCCC ACTCGTCTCT GATCGTCATC
CCCGGTGCGG GACACACATC CACAGTCGAG GCGCCTGAAA CTGTAAACAC ACTGCTGCGG
CGATTCCTCG ATGCACACGC GGACAATGGC TCGCAACGCT GA
 
Protein sequence
MPEIRVNGAT ISYEEHGTGP ETIVFAHGLL WSGRMFDHQV NALKDRYRCI TFDFRGQGQS 
EVTDSGYDMD TLTNDAAALI EALHAAPCHF VGLSMGGFVG MRLAIRRPDL IRSLILLETS
ADPEPRENVG RYRLLNFIAR WLGLRLVADQ VMPIMFGKTF LTDPNRAQER AMWRKRMTAN
HRIGISRAVR GVIERQGVYE QIDRITAPTL IIVGDQDVAT PPDKARRIFE RIPHSSLIVI
PGAGHTSTVE APETVNTLLR RFLDAHADNG SQR