| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3326 |
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| Symbol | |
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| ID | 5540824 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 4339353 |
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| End bp | 4340777 |
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| Gene Length | 1425 bp |
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| Protein Length | 474 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640895443 |
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| Product | protein-export membrane protein SecD |
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| Protein accession | YP_001433394 |
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| Protein GI | 156743265 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCGTAGCC GGGATATCTA CTCACTCATT TTCATCCTGC TGATCGCCGG GGTCGCATTG
TCAATCGTCT TTGCACCGGA GGGACGCTGG CTGTTCAATC GCGACGTCAG CGTCCGCCTG
GGTCTCGACT TGCGCGGCGG CACGCAGGTG CTGCTCCGCG CTGCTGAGCC GGTGGAGCGT
AGCGTCATGC AAACGGCGGC CGGCGTTATC GAGCGCCGCA TCAATGGTCT TGGCGTGGCC
GAGTCGGTGG TGCAGTTGTC GGGAAATGAT CGGATTATCG TCGAAATACC GGGTATCGCC
AATCCTGAAC AGGCGATTGA AACGCTGCGT GGCACCGGAA AACTGGAGTT CATCGACACG
AAAGGTGAGT TTCTGGCGCC CGGCGCCATC GTGCGCACCA CCGGCAGCCC CAACCCGATT
GCGCTGCGTC CCACGGCGAC GCTCACCGAA GCAGAGACGA TTACATCGAC TGAGACCATA
TCGCCAACGG CGCCGGAAGG TCCGATCTAT GAGAGCATTA CCGATGGCAA GGACCTGGAT
CTGAACTCGG TGCAACCGCC GCAGATCGCC GGGCAGAGTC TCCAGAACCA GTTCGCAGTG
CCCTTCGCGT TTACCGGCGA ATCGGCGCGC CGCCTGGAGC AGTTTACCGC CGCCAACATC
CAGCGCCCGA TGTGTATCGT GCTGGACAAT CAGGTGTTTA GTTGCCCAAT CGTCGAGGCG
GCGCTGGTCG GAGGGCGCGG CGAAATCACC ACCAGCACCC GCCAGGACGC CGAGCAGATC
TACACGCAGC TCAAATATGG CGCGTTGCCG GTGCCGCTTC AGGTCGAGTC GAGCCGCACG
GTCTCGGCGT CGCTGGGGCA GGGGTCGGTT GATGCCAGTA TTGTGGCGGG TGTGGTCGGT
CTGGCGACGG TGGCGCTGTT TATGATCCTG TTCTACCGGC TGCCCGGTGT GCTGGCGACG
GTGGCGCTTC TGCTCTATAC GTTGATCAGT TTCGCGCTCT ATCAGTTGAT TCCGGTGACG
CTGACGCTGC CGGGTATTGC CGGGTTCATC CTGTCAATCG GCGTGGCAGT GGACGCGAAT
GTGCTGATCT TTGCGCGTCT GAAGGAAGAG TTGCGTCGCG GTCGATCATT GAATGCGTCG
ATTGACGCCG CCTTTGTGGA AGCCTGGCCC GCCATTCGCG ATTCGAGCGT GGCAACGCTG
ATTACCTGCA CCATTCTCTT CATGTTCGGC AACACCTTTG GCGTCAGCCT CATCAAGGGT
TTTGCCCTAA CACTCGGGCT TGGTATTGTG CTGAGCCTCT TCACATCCAT GGTGGTGACG
CGCACCTTCC TGCATACGAT CAATCCGCTG CCATTCGCCC AGAATCCCTG GCTGTACGAA
CTGAAAGACG CGCCGGGAAT GCGCCACGCC CGTGAGGTGG CATAG
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| Protein sequence | MRSRDIYSLI FILLIAGVAL SIVFAPEGRW LFNRDVSVRL GLDLRGGTQV LLRAAEPVER
SVMQTAAGVI ERRINGLGVA ESVVQLSGND RIIVEIPGIA NPEQAIETLR GTGKLEFIDT
KGEFLAPGAI VRTTGSPNPI ALRPTATLTE AETITSTETI SPTAPEGPIY ESITDGKDLD
LNSVQPPQIA GQSLQNQFAV PFAFTGESAR RLEQFTAANI QRPMCIVLDN QVFSCPIVEA
ALVGGRGEIT TSTRQDAEQI YTQLKYGALP VPLQVESSRT VSASLGQGSV DASIVAGVVG
LATVALFMIL FYRLPGVLAT VALLLYTLIS FALYQLIPVT LTLPGIAGFI LSIGVAVDAN
VLIFARLKEE LRRGRSLNAS IDAAFVEAWP AIRDSSVATL ITCTILFMFG NTFGVSLIKG
FALTLGLGIV LSLFTSMVVT RTFLHTINPL PFAQNPWLYE LKDAPGMRHA REVA
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