| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3307 |
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| Symbol | |
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| ID | 5540805 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 4315115 |
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| End bp | 4318126 |
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| Gene Length | 3012 bp |
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| Protein Length | 1003 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640895425 |
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| Product | multi-sensor hybrid histidine kinase |
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| Protein accession | YP_001433376 |
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| Protein GI | 156743247 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.284418 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACATCGC TACGCGCGAC GACGCTCAAA GCCGTTGCTG CCGCCCTGAC AGCACTGCTG
GCATTACAGG TCCTCGCATC CGAGTTTATC ATCGGGCGAA GTTTCCGTGA ACTCGAAGAG
CGCAGCGTTC GGAATACCAT GCAGCAGACG CTCAGAACGC TGCGCAATGA GATCGATGCG
CTGTACGGCA ATACCAAAGA CTACGCGGCA TGGGACGCGA CCTATGAATT TGCCATGCAG
CGCGATCTCG ATTACATCGA CACCCATATG ACAACCGACG CGCTGATCAA CACGCGCATT
TCGTATGTCG CCTTCGTTAC TCCCTCCGGC GACATTGTCT ATACCCGTCG GCAGAGTAGT
ATCGATGGGC AGACATTGCC GATCCCCGCC GATCTGACGT CGTTCGATGG CGCGAATGCT
CTGTTTCTTC AGGTTGCCGC ACGAAACGAA GGGATCAGCG GCGTGATTGT GGTCAATGAC
CAACCAATGC TGATCGCTGC GCATCCGATC CTGACGAGCG CCGGAAGTGG ACCGCCGCGC
GGCGTTCTGA TTATGGGACG CGACTTCGAT GCAGCAGAAA TAGAGCGGAT GAGCAATATC
ATCGGCTATA GTCTGTCGCT GTTCCTGGTA AACGACGCTT CCGCCGCTCC CGACGTGACG
CTCGCACGCC GGTTGATGAA CGACGACACT CCTATCGTCG TCCGCCCGCT CTCTTTCGCC
GACGACCACA TCGCCGGGTA TGCGCAAATC GACGATCTGC GCGGCGGCAA GGGGATCGTG
TTGCGAATCG ATATGCCACG TGACATTCTC CAGTATGGTC TGTCCGCCTC GCGGTACTAT
CTATTGATTC TGCTGCTGGT GACCGGCGCC TTTGCTGCGG TGATCCTGAC GCTGATCGAG
CGCCGGATTC TGGCGCGCAT CATTTCGCTC AGCACGCAGG TGGCGCAAAT CGGGCGTGTC
GGCAACCATC AGGAGCGCGT TGCGCTGAGC GGAAACGATG AAATCTCCCA ACTAGGCGAT
GCTATCAACC GCATGCTCAA CGATCTGGCG CAGTCTGCTC AACGCCTGAT CCAGAGCGAG
GCGCGCTATC GGCAGCTGGT CGAAATCTCT CCCGAAGCAA TCATTGTGCA TGACAACGAG
CAGATCATCT ACATCAATCC GGCTGGGGCG CGCCTGCTCG GTTACGCCGA TTCGTCACGC
CTGATCGGTT CGCCCGCAGC GCCATTCCTC CCTACGGCGC TGCACAACAA AACAGACGAT
GGCGCCATTC GCTACGAACG TGATCTGACT CTTTCTAATG GGCAAACGGT GACATTGGAC
CTGATCGCTG CGCCATTCGT CGCCGACGGC GCATCGGTGT GGCAGGTCGT GGCGCACAAC
ATCACCGAAC GCAAACAGAC GGAGGAGGCG CTCCGCAATG CTAGAGACTG GGCGGAAGAG
GCGAGTCGCG CGAAGAGTCG CTTCCTCGCC AACATGAGCC ACGAACTCCG TACCCCGTTG
ACAACCATTA TCGGCTATGC CGACCTGATC ACCCTGGCAA CGCAGCAGGG CGAGTTCAAT
CGCATCAGAG ACGATATTAC GCGCGTGCGC AATGCGGGCA AACATCTGCT GGCGATCATC
AACGACCTGC TCGATCTCTC GAAGATTGAA GCCGGTCGTA TGGAGATTCA TATTGCGCCC
TTTTCAGTGC CCGCGCTTGC CGAGGAGGTG GTGGCAAGCA TGGATCTGTT GGCGCAGACC
CGCCGCAATA CGCTGATCCT GACCATCGAT CCGACCGTTG GAGTGATGCA CTCCGACGAT
GTGCGCGTGC GACAGGTGCT GTACAACCTG GTGCACAACG CCTGCAAGTT CACCGAAGAC
GGCGTCGTAA CCGTCACCAT TGCACGCAGC GCCCTGGAGA GCACAGTTCA TGTCAATGGT
CACTCTGCCA GAATCGTCTT TACCATCAGC GATACCGGGA TCGGTATGAC GGATGATCAG
ATGGCTCGTC TGTTCCAGGA ATTCACTCAG GCAGACCCAA CCACAATGCG CAAATACGGC
GGTACAGGAC TGGGACTGGC ATTGAGCCGT CACCTGGTCC GTATGCTTGG TGGTGATATA
ACCGTCACCA GCAAACCCGG CGTTGGAACG ACGTTTGTTG TCACCCTTCC CGAAAACCCG
GCGCAGGTTG CCGAGCCTGC GCCAGAATTG AGCGAGGGTG AAGTGTTAAC GGCATCAGCG
CCGGACACGA CACGCCACCA GGAACGCAAA CGCCTGATCC TGCTGATCGA CGATGATCCG
TCTGTCCGCG ATCTGCTGCC GCGCATGCTG GAACGTCACG ATCTCCATAT TGAAACCGCT
GCCGATGGAG CAAGCGGGCT GGAACTGGCG CGGCTCCTCA TGCCCGACCT GATTATCCTG
GACATCCTGA TGCCCGCGAT CGATGGCTGG ACGGTGTTAC GCGAACTGAA AGCGTCGAGC
GAAACCGCCG CAATCCCTGT TATACTACTT ACGATAGCAG ATGATACAAG GAGCGGAGCA
TTGTTGGGCG CCGCTGAAAT ACTGAGTAAG CCAACCGATC TTGATCGCCT GGAGCGCCGG
ATACGTCTGT TGCTCGACAA ACGAGCGACC CTCACCGATA CAGGTGAAAG ACGGGTGTTG
ATCATCGAGG ATGACGATGC CGTGCGCGAG TACCTGCGCC GCGCACTGGC TCGTGAGCAT
TCGGACTGGA CGATTCTCGA AGCGTCAGAC GGACAGACTG CGCTGGAGCA GTGCAAAACC
AGCATGCCGG ATAGCATTGT GCTCGATCTC ATGCTCCCTG GCATGGATGG TATACAGTTT
ATCGAGGCGC TACGTCTGCT CCCCAATGGA TGTTCGGTTC CAATGATTAT CGTCACTGCA
AAAGAATTGA CACCCGACGA GCGCGACCAT CTCCACCGGT CGGCGATTCG TATCCTGCAC
AAGGGAACGT TTCATTGCGA CGATTTTGTT CACGAAGTAC GCACTGCTGT TGCTACGTAT
GCGCAACTGT AA
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| Protein sequence | MTSLRATTLK AVAAALTALL ALQVLASEFI IGRSFRELEE RSVRNTMQQT LRTLRNEIDA
LYGNTKDYAA WDATYEFAMQ RDLDYIDTHM TTDALINTRI SYVAFVTPSG DIVYTRRQSS
IDGQTLPIPA DLTSFDGANA LFLQVAARNE GISGVIVVND QPMLIAAHPI LTSAGSGPPR
GVLIMGRDFD AAEIERMSNI IGYSLSLFLV NDASAAPDVT LARRLMNDDT PIVVRPLSFA
DDHIAGYAQI DDLRGGKGIV LRIDMPRDIL QYGLSASRYY LLILLLVTGA FAAVILTLIE
RRILARIISL STQVAQIGRV GNHQERVALS GNDEISQLGD AINRMLNDLA QSAQRLIQSE
ARYRQLVEIS PEAIIVHDNE QIIYINPAGA RLLGYADSSR LIGSPAAPFL PTALHNKTDD
GAIRYERDLT LSNGQTVTLD LIAAPFVADG ASVWQVVAHN ITERKQTEEA LRNARDWAEE
ASRAKSRFLA NMSHELRTPL TTIIGYADLI TLATQQGEFN RIRDDITRVR NAGKHLLAII
NDLLDLSKIE AGRMEIHIAP FSVPALAEEV VASMDLLAQT RRNTLILTID PTVGVMHSDD
VRVRQVLYNL VHNACKFTED GVVTVTIARS ALESTVHVNG HSARIVFTIS DTGIGMTDDQ
MARLFQEFTQ ADPTTMRKYG GTGLGLALSR HLVRMLGGDI TVTSKPGVGT TFVVTLPENP
AQVAEPAPEL SEGEVLTASA PDTTRHQERK RLILLIDDDP SVRDLLPRML ERHDLHIETA
ADGASGLELA RLLMPDLIIL DILMPAIDGW TVLRELKASS ETAAIPVILL TIADDTRSGA
LLGAAEILSK PTDLDRLERR IRLLLDKRAT LTDTGERRVL IIEDDDAVRE YLRRALAREH
SDWTILEASD GQTALEQCKT SMPDSIVLDL MLPGMDGIQF IEALRLLPNG CSVPMIIVTA
KELTPDERDH LHRSAIRILH KGTFHCDDFV HEVRTAVATY AQL
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