Gene Rcas_3305 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_3305 
Symbol 
ID5540803 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp4296351 
End bp4296947 
Gene Length597 bp 
Protein Length198 aa 
Translation table11 
GC content60% 
IMG OID640895423 
ProductCRISPR-associated Cas4 family protein 
Protein accessionYP_001433374 
Protein GI156743245 
COG category[L] Replication, recombination and repair 
COG ID[COG1468] RecB family exonuclease 
TIGRFAM ID[TIGR00372] CRISPR-associated protein Cas4 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.143494 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.352212 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGAAA GCACTTTCGA GGTGACCGAT CTGCGACAGT GGGCATACTG CCCGCGCGTC 
GTCTACTACC AGCACTGCAT GCCCGACATC CGACCCATGA CAAAGCTGAT GATCGCCGGC
ATGGAAGAAC ACCGGGCGGA AAGTGGGCGC GAGGAGCGGC GTTCGCTGCG CACCTACGGA
TTGAAACAGG GCGAACGCTT CTTCGATGTA CCACTGCGCT CAGAGACACT CGGGTTACGC
GGGCGCGTCG ATCTGGTCAT CGCCCTGCCC GACCGACAGC ACGCAACCGA AGTCATCGTC
GTAGAATACA AAAGCACCGA AGGCAAAGCC GGTCCGCACG TCAAACTCCA ACTCACCGCG
TATGCGCTCA TGATCGAAGA AGCGTGGGGC GTGCCGGTCA AACGAGGATT CATCTACCAC
ATGCCGGAGC ACAAAGCCGA AGCAGTGACA ATCAGCGCCG CGCTGCGCGA GCGTGTGTAC
ACAACCGTTG CCACGATCCG CGAAACAGTC GATCACGAAC GCATGCCTGC GCCGCCCGCC
TCACGCCGAC AGTGCGCCGT CTGTGAATTT CGCCGGTTCT GTAACGATGT CGTCTGA
 
Protein sequence
MSESTFEVTD LRQWAYCPRV VYYQHCMPDI RPMTKLMIAG MEEHRAESGR EERRSLRTYG 
LKQGERFFDV PLRSETLGLR GRVDLVIALP DRQHATEVIV VEYKSTEGKA GPHVKLQLTA
YALMIEEAWG VPVKRGFIYH MPEHKAEAVT ISAALRERVY TTVATIRETV DHERMPAPPA
SRRQCAVCEF RRFCNDVV