| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3301 |
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| Symbol | |
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| ID | 5540799 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 4291110 |
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| End bp | 4293449 |
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| Gene Length | 2340 bp |
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| Protein Length | 779 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640895419 |
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| Product | CRISPR-associated helicase Cas3 |
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| Protein accession | YP_001433370 |
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| Protein GI | 156743241 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1203] Predicted helicases |
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| TIGRFAM ID | [TIGR01587] CRISPR-associated helicase Cas3
[TIGR01596] CRISPR-associated endonuclease Cas3-HD |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.733843 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCCCT CGCCATGGCC TGATTGGATG GACCATATCC TGGCGAAGAG TCAGCAGTAC
GGCGGTGAGA CGCTGGCAGC ACACACGTGG GATGTGCTGG TCAAATTGTC CGATCTGTAC
CGACTGCGCC CACGCCTCGA CAATGGTTCG CAACTCTGGC ACTGCCTCTA CTGGGCGGCG
TTTCTGCACG ATTTTGGCAA AGCAGCGCGC GGATTCCAGC AGCGGCTGCG TGGTGGACAA
GCCTGGTCCC ATCGCCACGA GGTGCTGTCG CTGGCGTTTG TGGATACCAT CGCCGACGGC
TTTACCCCGG AGGAGCAACG CTGGTTGGTC GCGGCAATCG TCTCCCATCA CCGCGATGAG
CCGGAGATTG CGGAGACCTA TCCACCGGGT CTGCGCCGCG ATCCGCTGGT TGATCTGTGC
AACGAACTCG AACCACAAGT GATCGATCAT CTTCAACGCT GGCTGACGGA ATGCGCCAAC
CCCTGGCGTG AGGCGTTGGG GTTAGCTGAG GTGGTGGGGA AGATTACACC GCAATCGGTG
ACGGTCAACC CCAAACGGGT ACGCTACTGG TTGCAGGTCT ATCACGATTG GGTTGCGGCG
AACGATCCTG CAGCGCGGGT ACCCGGTATC TTGCTGCGTG GCTTGATCAC CACCGCCGAT
CATATGGCTT CAGCGCATCT GCATCGTGTG CCACCACCGA TCACCGAACC GTGGTCGGCA
TTGGCCAAAC GTCTCTTGTC GCAGGGACAG CAGGTCTACG ACCACCAACA GCAAAGTGGC
GAGATGAAAG GACAATCGGC GCTGCTCATG GCCCCAACCG GCAGTGGCAA AACCGAAGCC
GCACTCTATT GGGCACTCGG TGATGGCGCC GCACCTCCGG CGCGCATCTT TTACACTCTG
CCCTATCAGG CGAGCATGAA TGCAATGTAC GACCGATTGC GGCAGAACTT TGGCGATGAG
CTGGTCGGAT TGCAGCATGG CCGGGCAGCG CAGGCGCTCT ACGCCCGCTT CCGCGAGGGT
GAGGAATGGT CGGCAGCGGC GCGGCGCGTG CAGTGGGAGA AAAACCTGAA CATCCTGCAT
GCTCGCCCGC TCAAGGTGCT CAGTCCATAC CAACTCCTCA AAGCCCTCTT CCAACTGCGT
GGGTTTGAAG CCATGCTCAC CGATTATGCG CAGGCGGCAT TTGTGTTTGA TGAGATTCAC
GCTTACGAAC CGGAACGTCT AGCCCTGATT ACCGGTCTGA TGCGGTATCT ACGCGAGCAG
TTCGCTGCAC GTTTCTTTGT GATGTCGGCT ACATTTCCCC AGCTTATTCG CAAACAGTTA
ACGGTGGCAC TTGGTGACGT TCCGGTGATC CAGGCTTGCC CGGAGATCTT TACCCACTTT
CGTCGTCACC AACTATTCCT ATGCGACGGC GAATTGATCG ACCCGACTAC CATCGCCGCG
ATTGTTGCTG AAGTGCAGGC GGGCCGGCAA GTGTTGGTCT GCGCGAATAC GGTGGCGCGA
GCGCAAGCGC TGCGCGATCA GCTCGCGCAA GCCGGTCTCA CCGATGATCA ACTACTCTTG
ATCCATAGCC GCTTCACCTA TGGCGACCGC AGCCGCATCG AGCAAGACAT CCGCGCGCGC
TGCGGTAGTA ATGTCACGCC ACGACCGCCG CTGGCGCTCG TGGCGACGCA GGTGGTTGAG
GTGAGTCTCG ACATCGATCT CGACACGATC TACACCGATC CGGCGCCGCT TGAAGCGCTT
CTGCAACGCT TCGGGCGGGT CAACCGCAAA GGCGCAAAAG GCATCTGCCC GGTCTACGTT
TTTCGCCAGC CCACCGACGG GCAGGGCGTC TACGGGCGCG ACCGCGACCC GCAACAGGCG
GGCCACATCG TGCGCGTTAC GCTTGCCGAA CTGGAACAGC ATAACCGTGA AATCATCGAC
GAAGCGGCAA TCAACCAGTG GCTCGACAAC ATCTATGCCG ATCCCGTGCT CAGCCAGCAA
TGGACGGAAG CCTACCAACG GATGGCGCAG CAGGTCGAGC TGATCATCAA CGGGTTACGC
CCATTCCAGA GCGACGAACA GCGTGAAGAT GATTTCGAGC AAATGTTTGA TGGGGTTGAG
GTCGTGCCAC AGTGTTTTGA ACAGGCATAC GTTGATTGTC TGGTTCAGGA ACGGTTTATT
GAAGCGAATG ACTACCTGGT CAGCATCAGC AAACAGCGTT TTGCCATCCT GCGCAATCAG
GGCAAAATCA GACCGGCAGA AGAAGTCGGG CAGCGACGAG TGTGGGTAGC GCTCCTTCCC
TACGACTCGC GCAATGGTTT GTCATTTGGC GACACGACGT ATGATCCAGA CTGGAGTTGA
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| Protein sequence | MKPSPWPDWM DHILAKSQQY GGETLAAHTW DVLVKLSDLY RLRPRLDNGS QLWHCLYWAA
FLHDFGKAAR GFQQRLRGGQ AWSHRHEVLS LAFVDTIADG FTPEEQRWLV AAIVSHHRDE
PEIAETYPPG LRRDPLVDLC NELEPQVIDH LQRWLTECAN PWREALGLAE VVGKITPQSV
TVNPKRVRYW LQVYHDWVAA NDPAARVPGI LLRGLITTAD HMASAHLHRV PPPITEPWSA
LAKRLLSQGQ QVYDHQQQSG EMKGQSALLM APTGSGKTEA ALYWALGDGA APPARIFYTL
PYQASMNAMY DRLRQNFGDE LVGLQHGRAA QALYARFREG EEWSAAARRV QWEKNLNILH
ARPLKVLSPY QLLKALFQLR GFEAMLTDYA QAAFVFDEIH AYEPERLALI TGLMRYLREQ
FAARFFVMSA TFPQLIRKQL TVALGDVPVI QACPEIFTHF RRHQLFLCDG ELIDPTTIAA
IVAEVQAGRQ VLVCANTVAR AQALRDQLAQ AGLTDDQLLL IHSRFTYGDR SRIEQDIRAR
CGSNVTPRPP LALVATQVVE VSLDIDLDTI YTDPAPLEAL LQRFGRVNRK GAKGICPVYV
FRQPTDGQGV YGRDRDPQQA GHIVRVTLAE LEQHNREIID EAAINQWLDN IYADPVLSQQ
WTEAYQRMAQ QVELIINGLR PFQSDEQRED DFEQMFDGVE VVPQCFEQAY VDCLVQERFI
EANDYLVSIS KQRFAILRNQ GKIRPAEEVG QRRVWVALLP YDSRNGLSFG DTTYDPDWS
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