Gene Rcas_3283 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_3283 
Symbol 
ID5540781 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp4263962 
End bp4265005 
Gene Length1044 bp 
Protein Length347 aa 
Translation table11 
GC content58% 
IMG OID640895401 
Productglyceraldehyde-3-phosphate dehydrogenase, type I 
Protein accessionYP_001433352 
Protein GI156743223 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0057] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 
TIGRFAM ID[TIGR01534] glyceraldehyde-3-phosphate dehydrogenase, type I 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.405716 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCACGTG TCGCAATTAA TGGTTTTGGT CGAATCGGTC GTCAAAGCTT CAAAGCGATG 
CTCGAACAGT ATTCTGACGA CCTGGAGATC GTGGCCATAA ACGACCTGAC CGATAACGAA
ACGCTGGCGC ATCTGCTGCG CCACGACTCG ACCTATGGCG CATTCGACGG CGATGTCGTG
GTGACGAACG ACCGGATCAG CGTCACGTTC TATGGCGAGG ATGGTGATGA GCGCCAGATC
GACATTGTGG CGCTCGAGGA ACGTGATCCG GCACAATTGC CCTGGCGTAA TCTGGGCATC
GATATTGTCA TCGAGTCAAC CGGACGCTTC ACCGATGCCG AGAAAGCGCG CGCACACCTG
CAAGCCGGTG CGCGTAAGGT CATTATCACA GCGCCCGCCA AAGGGGAAGA CATCACCATC
TGTCTCGGCG TCAACGAAGA TCGTTACGAC AACGCCGTGC ACCACATCAT CTCGAATGCG
TCATGCACCA CCAACTGTCT CGCGCCGGTT GCGAAAGTGC TCAACGACCG CTTTGGCATC
CGCCGTGGAT TGATGACGAC GATCCACTCG TACACCATGG ATCAGAACTT GCAGGACAAT
GTCCACAAGG ATTTGCGGCG CGCGCGCGCG GCTGCGATGA ACATTGTGCC AACCACGACC
GGTGCGGCGC GCGCGGTGGC GCTGGTTATC CCCGAACTCA AAGGCAAGTT CGACGGGTTC
GCCGTGCGGG TGCCGACGCC GACCGTCTCG ATGATCGACT TCGTGGTCGA ACTCGAGCGG
AGCGCCTCTG TCGATGAGGT GAATGAGACC TTCCGCGAAG CGGCACAGAG CAAGGAACTG
GAAGGCATTC TGGAAGTGAC CGAAGAGGAA CTGGTATCGA CTGACTTTAT CGGTTCGACG
GCATCAGCCA TTGTCGATCT GCCGCTGACG ATGGCGCTGG GGGGCAACCT GATCAAGGTG
ATCGCCTGGT ACGACAACGA ATGGGGCTAC GCCACGCGCA TCGCCGATCT GACGGCATTC
ATTGCCGATG AGATGGAGGA ATAA
 
Protein sequence
MARVAINGFG RIGRQSFKAM LEQYSDDLEI VAINDLTDNE TLAHLLRHDS TYGAFDGDVV 
VTNDRISVTF YGEDGDERQI DIVALEERDP AQLPWRNLGI DIVIESTGRF TDAEKARAHL
QAGARKVIIT APAKGEDITI CLGVNEDRYD NAVHHIISNA SCTTNCLAPV AKVLNDRFGI
RRGLMTTIHS YTMDQNLQDN VHKDLRRARA AAMNIVPTTT GAARAVALVI PELKGKFDGF
AVRVPTPTVS MIDFVVELER SASVDEVNET FREAAQSKEL EGILEVTEEE LVSTDFIGST
ASAIVDLPLT MALGGNLIKV IAWYDNEWGY ATRIADLTAF IADEMEE