| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3274 |
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| Symbol | |
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| ID | 5540772 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 4250336 |
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| End bp | 4251586 |
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| Gene Length | 1251 bp |
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| Protein Length | 416 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640895392 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001433343 |
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| Protein GI | 156743214 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.292319 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCGGCG AGCCGCACTA TGACGAGGCG ATTGTACACT TTCAGCGTGG CCTGGTGCTT
GAACAAGCGA ACCGCGTCGA AGAGGCGGTC GAAGAATATC GGCGCGCGTT AGAGCATAAC
CCGCATCTCG CAGAGGCGCA TGATGCCCTT GGCAATTACT ACCATCGGCA TGGTCTGCTG
GCAAAGGCAG CGGAAGAGTT TCGCATCGTT GCCAATCTGG AAGGCGGGTT TCTGGCATAC
TTCAACATCG GTAGCATCCT TATCGAACTT GGCAGATACG ACGAGGCCAT CAATGCGCTG
CTCCACTGTC TGATCTTTGA TGCCGAAGAC CCTGCGGTGC ATTATCAACT CGGGCTGGCG
CACTTTCTGC ACGGTGATGA TTATGCGGCG CTCTACCATC TTCAGATGAC GCAGCAGCGC
TATCCAAACG ACAGTAGCCT CCACCTGCTG ATTGGTCGCT GCCATTTGCG ACTGGGCGCA
TACGATGATG CAGAGACGGC GTTTCACGTC GCTCTCCGTC ACGCTACACA CGACATTGAT
CGGCTTCGCA TCCGAATGTA TCTTCAGGCA GTCGAACGCC ACCGTGAAAT TGGCGTGGTC
CATTCGCTCA GAGAGCGTTT CTATGCTGAA CAGGGTGTTG CCTATCTTGG CTCGACCCAC
GACGACGGAA ACAGAACAGA GGAATTTGCT GATTTCCACT TTACCTACCC CGACATTGCC
ATCAGCCTCC ATCGCCTCAC CCGCCTTGCC AGATTGCAAC GCTGGCGTCT GACGTGTATC
GTTCCGATTG ATCGCCTGGC TGAACCGCTG GCTCGCGCGC TGGCAGAATT GCTTCAGGTT
CCGCTGCGCG GCGCTGATGC GCTGCAACCC GATGATATTG CCTTGCTGAC CCTCGCCATT
GGTCACGAAG CCGAACTGTT GAAACTGGCG ATCGAACGGG CGCCGTGTGC ATCGGTCACG
TTCTGTCTTG GGTTGGATTG GTTGCGCCAT AATGCCGTCG TCCCGGATGT GATCGGGGTC
GTTGCACGCG ATATGTGCAG TGTGCCGTGG GAACCTGAGT TTCGTCGCCT CCGCGCGCAG
GGTGCGCCTG TTGATCAACT GAATGCCTGT CTGAACCAGG CGACGCAGCA GATTGTCGCC
GCCGTGCAAT CGACGCCCGC TCCGATCACG CCGCAGAGTC TGGCGTTCTT TCAAAAGTTC
CGCCGCCTGC GGTATATCGA ACATGCCTGC GGCGCAACCA TCACCTGCTG A
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| Protein sequence | MLGEPHYDEA IVHFQRGLVL EQANRVEEAV EEYRRALEHN PHLAEAHDAL GNYYHRHGLL
AKAAEEFRIV ANLEGGFLAY FNIGSILIEL GRYDEAINAL LHCLIFDAED PAVHYQLGLA
HFLHGDDYAA LYHLQMTQQR YPNDSSLHLL IGRCHLRLGA YDDAETAFHV ALRHATHDID
RLRIRMYLQA VERHREIGVV HSLRERFYAE QGVAYLGSTH DDGNRTEEFA DFHFTYPDIA
ISLHRLTRLA RLQRWRLTCI VPIDRLAEPL ARALAELLQV PLRGADALQP DDIALLTLAI
GHEAELLKLA IERAPCASVT FCLGLDWLRH NAVVPDVIGV VARDMCSVPW EPEFRRLRAQ
GAPVDQLNAC LNQATQQIVA AVQSTPAPIT PQSLAFFQKF RRLRYIEHAC GATITC
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