| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3273 |
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| Symbol | |
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| ID | 5540771 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 4248128 |
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| End bp | 4249939 |
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| Gene Length | 1812 bp |
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| Protein Length | 603 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640895391 |
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| Product | pepF/M3 family oligoendopeptidase |
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| Protein accession | YP_001433342 |
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| Protein GI | 156743213 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1164] Oligoendopeptidase F |
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| TIGRFAM ID | [TIGR02290] oligoendopeptidase, pepF/M3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.474589 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGCCT CCGTAAGCGA AACTCTTCCC CACTGGGATA TGACCGTCGT CTACCCCGCG
CTCGATGCGC CAGAATTCAA CCGCGACCTT GTTGCAGTAC GCCAGGCATT CGATGATATG
ACCGCGCTGT TTGATCGACT GGGCATTGAT CGGCGCGACG ATCAGGCAAC GGATAATACT
GCGCTGGCGG CATTCGATAC CGTCATTGCA GCGTTGAACG ATCTGCTGGA ACGCTTTACC
ACGCTGCGCG CCTATGTCTA CAGTTTCGTT GCAACGGATT CGCGCGATGA TCGGGCGCAG
GCGGCGCTCA GCCTATTGAT GCAGGACAGC GTCAAACTAA CGAAACTGTC GAAACGGTTG
ACGGCATGGA TCGGCGGACT GGATGCTGAG ACGCTGATTC AGCGCTCGGC GGTTGCGCGC
GATCATGCGT ATCTGGTGCG ACGTGCCGTT GAAGAAGCCC GTCACCTGAT GTCGCCGGCG
GAAGAGGAAC TTGCCGCAGA ACTCGATCTG TCGGGCGGGA TTGCCTGGAC GCGCCTGTAC
CAGAATCTGA CGTCGCAGAT GATGGTCCCG ATTGAGCGCG ATGGGCAGGT AGTCGAACTG
CCGATGAGTC AGGTGCGCAA CCTGGCGCGC GACCCCAGCC GCGAGGTGCG TCGCCATGCG
CATGAAGCGG AACTTGCCGC CTGGGAACGC GCTGCACTGC CCATCGCGGC GGCGCTCAAC
AGTATCAAAG GACAGGTGCT TGCGCTCGGT CGCCGGCGGT GCTGGGCAAC ACCCCTCGAC
GCATCGCTGT TCGACAATGG AATCGACCGC GCCACGCTCG ATGCAATGAT GCATGCCTCG
CGCGAGTTCT TCCCCGATTT TCGGCGCTAC CTGCGCGCCA AAGCACGGCT GCTCGGCGTC
GAACGTCTCG CCTGGTACGA CCTGTTCGCG CCGGTCGGCG GCGGCGGACG CAGCTGGCAG
TTCAGCGATG CTGAGGCATT TATCGTCGCC CAATTTGCGC GCTACTCGCC TCGTATGGGG
GAGTTTGCGG CGCGAGCGTT TCGTGAGCGC TGGATCGATG CCGAACCACG TGCCGGAAAA
GTTGGCGGTG CTTTCTGCAT GTCGCTCCGA CGTGATGAGT CGCGTATCCT GGTGAACCAC
GACTCGACGG CGGATAGCAT GTTCACCCTG GCGCACGAAC TCGGTCATGC CTACCACAAT
CTGAACCTGG CGCACCAGAC GATGCTCAAC CGTGATACGC CGATGACTCT GGCAGAAACG
GCGAGCATTT TCTGTGAGAC GATTGTGCGC AATGCGGCTC TGCAAGAAGC AACCCGCGAT
GAAACGCTTG AAATTCTTGA GGCGTTCCTC AGTGGCGCTT GCCAGGTGGT GGTCGATATT
ACCTCGCGCT TCCTCTTTGA GACGGCGCTC TTCGAGCAGC GTGCCGCGCG CGACCTCTCG
GTGGCGGAAT TGTGTACCAT GATGACCGAT GCGCAAAAGC AGACGTATGG CGATGTGCTC
GATGAGCAGA CCTTGCATCC ATTTATGTGG GCTGTCAAGG GTCACTACTA CAGCAGTGGA
TTCTCCTACT ACAACTATCC CTATATGTTC GGGTTGCTGT TTGGATTGGG GTTGTACGCC
GAGTACCAAC GGGCGCCTGA AGCGTTTCAG GCGCATTACG ACGGCCTGCT GGCTTCGACC
GGGCTGGCAA GCCCTCTCGA TCTGGCAGCG CGGTTGGGAT TTGATCTGCG CGCCCCTGCG
TTCTGGCGTG CCAGCCTTGA GGTTGTTCGG AAAGATATTG ATCGCTTTGA GGCGCTGGTG
GATGTGGTAT GA
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| Protein sequence | MTASVSETLP HWDMTVVYPA LDAPEFNRDL VAVRQAFDDM TALFDRLGID RRDDQATDNT
ALAAFDTVIA ALNDLLERFT TLRAYVYSFV ATDSRDDRAQ AALSLLMQDS VKLTKLSKRL
TAWIGGLDAE TLIQRSAVAR DHAYLVRRAV EEARHLMSPA EEELAAELDL SGGIAWTRLY
QNLTSQMMVP IERDGQVVEL PMSQVRNLAR DPSREVRRHA HEAELAAWER AALPIAAALN
SIKGQVLALG RRRCWATPLD ASLFDNGIDR ATLDAMMHAS REFFPDFRRY LRAKARLLGV
ERLAWYDLFA PVGGGGRSWQ FSDAEAFIVA QFARYSPRMG EFAARAFRER WIDAEPRAGK
VGGAFCMSLR RDESRILVNH DSTADSMFTL AHELGHAYHN LNLAHQTMLN RDTPMTLAET
ASIFCETIVR NAALQEATRD ETLEILEAFL SGACQVVVDI TSRFLFETAL FEQRAARDLS
VAELCTMMTD AQKQTYGDVL DEQTLHPFMW AVKGHYYSSG FSYYNYPYMF GLLFGLGLYA
EYQRAPEAFQ AHYDGLLAST GLASPLDLAA RLGFDLRAPA FWRASLEVVR KDIDRFEALV
DVV
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