| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3244 |
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| Symbol | |
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| ID | 5540742 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 4216223 |
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| End bp | 4218973 |
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| Gene Length | 2751 bp |
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| Protein Length | 916 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640895365 |
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| Product | glycoside hydrolase family protein |
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| Protein accession | YP_001433316 |
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| Protein GI | 156743187 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3250] Beta-galactosidase/beta-glucuronidase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0368186 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTTCCT ATCACATGCC GCTCCCTGGT CCCTGGGAGT TTCGTTTTGA CGATCAATCC
GACTGGCGCC CCATTGCGGT TCCCGGATGC TGGGAAGACG CTGGTTTTGT AAAAGACCGC
TCTGGTCCGG CATGGTATCG CACCTCATTC GTAATTCCGC ACGAACTGGA AGGACGGCGC
CTCTTTCTGC ACTTTGGCGC CGTCAGTTAT CACTGTGAAG CATTCATCGT GCGCGATTCG
GGTGATATGT GCAGCATCGG CACGCACACC GGCATGTGGG ATGCGTTCGA CCTCGAAATT
GGCGATGCCG CAGCGCCGGG TGAGCATGTC ACGTTGCTGG TGCGGGTCGA GAAACCGGCA
AGTCTGAGCG ACGGACCGGA GTCGGCATCG CTGCCAGGGC GCTTCCCGCT GCGCGAAACG
CTCGCCGGAT TTCTCCCGTA TGTCTGGGGG CATAGCCACG GCGGAATCTG GCAGGAAGTC
GCCCTGATCG CCTGCGGTGC GACGCGCTTT CTCGATGCCT GGGTGCATGG CGCGCCTGAT
GGTCACATCT TCGTGGAAGC GGAACTCGAT GGTCCGGCAC GTGTCACGCT GGAACTCTAC
CGTCCAGATG GCAGTTTCAT CCTCTCGGCA GAAGAAGATG CTGTGCGTGT GGAAACCGCG
AGCGGCATTC GCTACCGGCT GCACATGGAC GGCCCGACCT CCGACGCACG CCTCTGGTCG
CCGGACGATC CGGCGCTTTA CCGGGCTGTG CTGCGCGCCG GTTACGATGA TCGCATCGAA
CTGCGCTTTG GGTTGCGCTC ATTCGACGCG GATGGCGCAA CGCTGCGACT TAACGGCGCA
CCGATCTACC CCCGCATGAT CCTGTCGTGG GGCTGGCGCT GGGAGACCTT CGCCCCCAAT
CCGGGACCGG AACGGGTGCG CGCCGATTTC GAGCGCCTGA AACGCATGGG GTACAACGGC
ATCAAGTGTT GTCTCTGGTT CCCGCCTCGC TACTACTTCG ACCTGGCGGA CGAACTGGGC
ATGCTGTTGT GGATCGAGTT GCCGATGTGG TTGCCTCGCG TAACCGACCA TTTCCGTCGT
CAGACGCCGG TTGAATACGA ACGCCTGGTT CGTCAGGCGC GGCGACATCC ATCGGTAGTC
CTCTACAGCC TGGGATGCGA ACTGGGAAAG GACGTCGGCG CCGATATTCT CGGCTCGCTG
TACGCGATGA CGCGCAGTAT GTGCGGCGAC GCGCTTGTGC GCGATAACAG CGGCTCCGGC
GAAGCCTACG GCGGTCTGCT CAACGAGTTC GCTCAGTACT ACGACTACCA CTTCTATGCC
GACCTGCACT TCTTTCGTGG TCTTCTCGAC GCCTTTTCGC CGCGCTGGCG CCCGGCACAA
CCCTGGTTGT TCGGTGAATA CTGCGATTAC GATACCTTCC GTGATCTGCG GCGCTACCGC
CGGGCGGATG GTTCACGCCC CTGGTGGTTG AGCGCCGATC TGGCGATCAA TCCAACCGGC
GCGCGCTGGA CGAACGAAGC GCCCTTTCTC GAAGAGCGGC TGCGCGCACA GGGGTTGTGG
GAGCGCAGTG CTGAACTCGA AGCATTCTCG TATGCGCATG GCTTGCTTCA CCGCAAATGG
ACAATCGAGA CGACGCGCAT GTATCGTGAG GTTTCCGGCT ATGTCATCAC CGGCGAAGCC
GACACGCCGA TCACCAGCGC TGGCATGTGG GATGCAACCG GCGCCCTCAA GTACGATCCC
ACCGAGTTCC GGCGTTTCAA CAACGATCTG GTCGCACTTA TCGGATGGGA CCGACGACGC
GACTGGGTGC GCGGCGGCGA CCGCGCGGCA TTCTGGGATG TCTGGAGTTA TAACGCCGGA
ACGCTCGTCC GTCCCCACGT GATTGTATCG CACTATGGGG CGCAGGGCGG ACCGGCGCGC
GCTGCCTGGA GCATCGCCTT CGATGACGAA GCGCCCTTTG CGTCTGGTGA TATCGTCGCC
AGCCACGATG TTATGCCCGG CGACGTGCGC GAAATCGGCG TAGCGGAATT TACCGCACCC
GATGTGAGCG CACCACTGCG CGCCATGTTC CGGGTGTCGC TTAATGTCGG AACGCAGCGG
ACGGACAATG CCTGGCCAAT CTGGTTCTTT CCTGCGAACC CGTGGGCAAC CATGCGCAAT
GTGGCGATCT ACGATCCGCT GGGACGGTTG CGCGATCTCA CCCGACTGGC GCCACAGGTG
GTTGAAGTGA CGCACGCCGA TCTGCGGAGC GAAGCCGGAG CGCGCGTCGA TCTGCATGCA
GCGCCGTTCG TCGTTGTCGC CAGCGCCTGG ACACGCGCAC TATCGATGTA TACTCGCGGA
GGCGGGCGTG TCGTGCTGCT CCAGGACGGC GACGGTCCGC CGGGACCGGT TGCAACGGCG
GCTATGCCGT TCTGGCGCGA GGCGCTGCGG GTCTGTGAGC CGCACCCGGC GTGGGGTGAT
TTTCCGCACG ATGGATGGGC TGGTCTCCAA TTCTTTGGCT GCGCCACCGA CTGCGCGCTC
GATACGCAGC CACTCGACGG ACTGACGCGC CCTATTCTGC GCCGTATCGA CACGCGCACC
ACCGCCGTTC ACGACTATGC CGCCGAGGTT GTATGGGGCG AGGGACGATT GATCGTCAGC
ACTCTGCGCA TCTACGGCGG CGCCGGTGAG CAGCCTTCCG GCATCGGGCG CAATACGTCG
GCTGCGTATT TACTGCTGTG CTGGGTGAAG TATCTGGGGA GCAAGAGGTG A
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| Protein sequence | MLSYHMPLPG PWEFRFDDQS DWRPIAVPGC WEDAGFVKDR SGPAWYRTSF VIPHELEGRR
LFLHFGAVSY HCEAFIVRDS GDMCSIGTHT GMWDAFDLEI GDAAAPGEHV TLLVRVEKPA
SLSDGPESAS LPGRFPLRET LAGFLPYVWG HSHGGIWQEV ALIACGATRF LDAWVHGAPD
GHIFVEAELD GPARVTLELY RPDGSFILSA EEDAVRVETA SGIRYRLHMD GPTSDARLWS
PDDPALYRAV LRAGYDDRIE LRFGLRSFDA DGATLRLNGA PIYPRMILSW GWRWETFAPN
PGPERVRADF ERLKRMGYNG IKCCLWFPPR YYFDLADELG MLLWIELPMW LPRVTDHFRR
QTPVEYERLV RQARRHPSVV LYSLGCELGK DVGADILGSL YAMTRSMCGD ALVRDNSGSG
EAYGGLLNEF AQYYDYHFYA DLHFFRGLLD AFSPRWRPAQ PWLFGEYCDY DTFRDLRRYR
RADGSRPWWL SADLAINPTG ARWTNEAPFL EERLRAQGLW ERSAELEAFS YAHGLLHRKW
TIETTRMYRE VSGYVITGEA DTPITSAGMW DATGALKYDP TEFRRFNNDL VALIGWDRRR
DWVRGGDRAA FWDVWSYNAG TLVRPHVIVS HYGAQGGPAR AAWSIAFDDE APFASGDIVA
SHDVMPGDVR EIGVAEFTAP DVSAPLRAMF RVSLNVGTQR TDNAWPIWFF PANPWATMRN
VAIYDPLGRL RDLTRLAPQV VEVTHADLRS EAGARVDLHA APFVVVASAW TRALSMYTRG
GGRVVLLQDG DGPPGPVATA AMPFWREALR VCEPHPAWGD FPHDGWAGLQ FFGCATDCAL
DTQPLDGLTR PILRRIDTRT TAVHDYAAEV VWGEGRLIVS TLRIYGGAGE QPSGIGRNTS
AAYLLLCWVK YLGSKR
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