Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_3241 |
Symbol | |
ID | 5540739 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 4210611 |
End bp | 4212047 |
Gene Length | 1437 bp |
Protein Length | 478 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640895362 |
Product | type II secretion system protein E |
Protein accession | YP_001433313 |
Protein GI | 156743184 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGTTAC TGAAGCGAAT TGGCGGGTCG CAACCGCAAT CAACGTCCGA ACCTGCTGTG CCGGTCAGCG CTCCGGCGCC GTCTGACGCA GCCAACCATA CGCCAGCTTC GCGGACGGCG CCATCGACCG TTTCCTCCGG CAGCGAGATG TCGCAGCAAC GCATGCTGGA ATTGTCGCTC TGGATCGTTG ATCGCATTCT CAGTTCGCTC GGCAATCAGC AGGAACTCAA ACGCTCCCCC GAAATGGAGC GTCAACTGCA AGAAAAGTTC ACCCTCGCCT ACCGGCAGAG CGGCGTCAAC CTGACCGACG ATCAGACCAA ACACCTCTAC GATATGGTCA TGGACGAGTT GTTCGGTTTT GGTCCCATCG AGCCGCTGCT CCGTGACGAT AGCATCACCG AGGTGATGGT CAATGGACCG CGCGCCGTCT ACGTCGAGCA AAAAGGCAAG ATCACGTTGA CCCAGGTGCG GTTTGCCAAC GATGAGCATG TGCTGAAAGT CATCGACCGC ATCATTCGCC CGTTGGGACG ACGCATTGAC CGCAAATGGC CGATGGTCGA TGCGCGTCTG CCCGATGGTT CGCGCGTCAA TGCGATCATT CCACCCTGCG CCATCGATGG ACCATCGATT ACGATCCGCA AATTTGCCAA GAAAAAACTG ACGGTCGAAG ATCTGATCCG CTTCGGTTCG ATGACGCCTG AAATGGCGGA GTTTCTGCGC GCGTGCGTCG TCAGTCGCTT GAATATCATC GTTTCCGGCG GCACCGGCTC CGGCAAGACG ACGCTCCTGA ACGTGTTATC GAACTTCATC CCTCCCGATG AGCGCATCGT TACGATTGAA GACAGCGCCG AACTGAAACT CGGGCAGGAT CACGTGGTGC GCCTGGAGTC GAAACCGCCG GAGATCGACG GCACCGGGCG CGTGACGATC AACGACCTGG TGATCAACTC GCTGCGTATG CGCCCGGAAC GGATCGTCAT AGGTGAGTGC CGCGGCGGCG AAACCATGGC CATGCTCCAG GCAATGAACA CTGGTCACGA TGGATCGCTG TCGACCCTCC ACGCCAACTC GCCGCGCGAC GCCATTGCGC GTATGGAGAC AATGGCGATG ATGGCGGGGA TGGATATGCC GCTCCGGGTG ATCCGCGAAC AGATTGCATC CGCCATCGAC CTGATTGTGC AGCAGACGCG CCTGGAAGAC GGCAGTCGCA AGATTTCGTA CATTACTGAG GTGCAGGGTA TGGAAGGTGA TGTCGTGGTG TTGCAGGATA TCTTCCTGCT GCACATTCTC GGCAAAACCC CGGAGGGCAA GATTATCAGC GAGTTGCGAC CTACCGGCAC CCGTCCGCGT TTCACTGCGC GTCTCGAGGC GCATGGCTTC AAACTGCCGC CATCGATCTT CGGCGCAACT GTTCCAGGGC AGAAACGGCC GTGGTGA
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Protein sequence | MSLLKRIGGS QPQSTSEPAV PVSAPAPSDA ANHTPASRTA PSTVSSGSEM SQQRMLELSL WIVDRILSSL GNQQELKRSP EMERQLQEKF TLAYRQSGVN LTDDQTKHLY DMVMDELFGF GPIEPLLRDD SITEVMVNGP RAVYVEQKGK ITLTQVRFAN DEHVLKVIDR IIRPLGRRID RKWPMVDARL PDGSRVNAII PPCAIDGPSI TIRKFAKKKL TVEDLIRFGS MTPEMAEFLR ACVVSRLNII VSGGTGSGKT TLLNVLSNFI PPDERIVTIE DSAELKLGQD HVVRLESKPP EIDGTGRVTI NDLVINSLRM RPERIVIGEC RGGETMAMLQ AMNTGHDGSL STLHANSPRD AIARMETMAM MAGMDMPLRV IREQIASAID LIVQQTRLED GSRKISYITE VQGMEGDVVV LQDIFLLHIL GKTPEGKIIS ELRPTGTRPR FTARLEAHGF KLPPSIFGAT VPGQKRPW
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