| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3222 |
|---|
| Symbol | |
|---|
| ID | 5540720 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 4192816 |
|---|
| End bp | 4193760 |
|---|
| Gene Length | 945 bp |
|---|
| Protein Length | 314 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640895343 |
|---|
| Product | ribokinase-like domain-containing protein |
|---|
| Protein accession | YP_001433294 |
|---|
| Protein GI | 156743165 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0524] Sugar kinases, ribokinase family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.830633 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0230782 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAACCAG ACAATGACAA TGCATGCGAA CCGATCGTTG TTGTAGGGGC GGCGTGTCTG
GACGTGAAGT GTCGTCTACG TGGCGAGGTT CTTGCCAGCA CCTCGAATTC GGCGGATGTG
CGTATCAGCG TTGGGGGGTG TGCACGGAAT GTCGCCGAAA ATCTGGCGCG CCTCGGCTAT
CCGACGACGT TGGTCACTGT TGTGTGCGAT GATGATTTCG GGCAGGCAAT TGTGCAGCAG
ACGGCGCGCG CAGGAGTGAA TACCGATCAC GTGATCAGGG TGTGCGACCA TCACTCACCT
GCCTATGTTG CGCTGCTCTC GCCGGAAGGT CAGTTGATCA CCGGCGTAGA CGACACTGAA
GCGGTTGCTG CGCTGACGCC AGCGGTGATC ACGAGCCATC GCGCTCTGTT TCAGCGCGCT
CCCATGGTCG TGATGGACGC AAATGTACCG GTCGAGAGTG CGAAGACATT GCTCGACATC
TGTGCGGCTG CCGACGTGCC GGTAGCCCTC GATCCGGTGG CATACGCACC GGCGCTGCGC
TACCGACCGT TCATCGGATC ATTCTCGCTT GTGACCCCGA ATGCTATCGA GGCGGAAGCC
TTGACCGGCA TACACGTGAC GGATGTGGCG CAGGCGATTC TGGCGGCTCG CCGCCTGACG
GCGGAAGGAG TCGAGATTGC GATTGTCACA TTGGCGGAAC AGGGACTGGT GTATGCAACG
TCGTCTTCGA GCGGGCATAT CCCGGCGATC AATGTCGAAA TTGTCGATCC AACCGGCGCC
GGTGATGCGC TGACCGCGAC AGTGGTGTAT GCGTTGCTCC ATGATATTCC GATTGATGAA
GCAGTGCGCC TGGGGGTGAG CGCGGCAACG CTGACGCTCG AATCGCCTGA TACGGTGCGG
CAGGATTTGA CACTGGAAAT CCTGTATGCG CAGCTCGTTA TTTGA
|
|---|
| Protein sequence | MQPDNDNACE PIVVVGAACL DVKCRLRGEV LASTSNSADV RISVGGCARN VAENLARLGY
PTTLVTVVCD DDFGQAIVQQ TARAGVNTDH VIRVCDHHSP AYVALLSPEG QLITGVDDTE
AVAALTPAVI TSHRALFQRA PMVVMDANVP VESAKTLLDI CAAADVPVAL DPVAYAPALR
YRPFIGSFSL VTPNAIEAEA LTGIHVTDVA QAILAARRLT AEGVEIAIVT LAEQGLVYAT
SSSSGHIPAI NVEIVDPTGA GDALTATVVY ALLHDIPIDE AVRLGVSAAT LTLESPDTVR
QDLTLEILYA QLVI
|
|---|
| |