| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3220 |
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| Symbol | |
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| ID | 5540718 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 4187853 |
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| End bp | 4191389 |
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| Gene Length | 3537 bp |
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| Protein Length | 1178 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640895341 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001433292 |
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| Protein GI | 156743163 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.166794 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGGCGC TAATTACCGC TCTGGTCCTG CTTGTGATTG TGGTTGTCGC TCTGGCGCTG
TTGCCGTCGC TGCGCGCCCA ACTGCGCTTT TGGGTGCAAA CAGCACGGGC GCAGGTATTA
CGGCACGCCA GGCTGGTGCG AAGTGCAACG ATCATTAGCA GTTCTGGCGA GGAGATAGTG
GTGCCTGATG CCGTGCGCGC GGAGTCGCCC TGGACGGGGC GTGTGCGCGG ATGGGCGTCC
GGCGCGCGCC TGCCATCTAT TCTCACCGGT GTGTTGGTCG TGACGCTGAT CGTGCTCGGA
TTGCCGCGCC TGCTCCCCAG CGCCCGCGTC GATGAATTGA TAGTGCTGGT CGCGCCATTC
TCTGAACCGG GCGGTGTTCC CGGCGCTACG GGTCGCGCCG TTGCGCAGGA ATTGGTGGAC
GTTCTGACAG CGACGGCGGG ATCAGGTGTA GCCATTCGAC TGATCGATGC GCCGCCTGCC
GATCAGGCGG CGGCGCTAGC GCTGCTGCGC GAGAATCGCG CCGATATGAT CATTGTGGGC
GAGATCGCAC CTGGCGGAAT GCTCGATTCG GCAACGTTGA CGCCGGTGCT CATCTATGCG
CCAGGCGGCA TTCAGGCGTT TGCCAGCCTT GAAGGGTATG CCGGGCGCTT TGCTCTCCCG
ACGGTTTATC CGCTTGCCAC GCAGCCGATC AATGGGCGTG TCGTTCTGCC GCGCCTGGTG
CGCGCGCTGG CGGATTACAA CAGTGGGCAG TACAATGCCG CAGTTACGGC GTTCGATGCG
CTGGAACGCG AACAGCCAGC GTTGCGCCCT GGCTTGCTGC GCGCCCTGCG CGCAATGACC
TGGTGGGCGC GCGGTAACTA TGAGCAATCG ATGAGCGAAT TTCGCCGGGC GATTGCCGCC
ATGCCCGACG CGCCGCCGAC CGAACTGGCG CGCCTGTATG TTTCTCTTGG CGCCGTGCAG
CACGATATGA GCGATCCGGC GGCGCGTGAT TCGTTCAATC AGGCGATTGC GCTCCTTCAG
GGGCAGGACC TCGGTGAATT GCGCTATAAC CTGGCGCTCG AGGAATTGCG GTCGGGTGAT
CCTGCCGCTG CTGCTGTGTC GCTCGAACAG GCGCGACAAT TATTGCCGCC ATCGACGTCG
CTGCTTGTTG CGCTCGCCGA GGCATATCGT CTTAGTGGAC GATTCGATGC GGCATCGGAG
ACGCTTGCCG CTGCCACTCG TCAGATCGGC GCCGATGACC GCGTCGTTCC ATTCGATTTG
CGCCCCCTGA TGAATGCCCG CTTGCGGGCA CATGTGCAGA GCGAGCGGGC GCTGCTCCAC
ATGGCGCGCA TGGTCAACGC GCGCGGTCCG TTGCTGTGGG AGTTGGACCT GATTGCAACA
CCCTCGGAGC CCGATCGCGC GCAGCGGGAA ACGGACCTGA ATCAGATTCT CAATGATATG
TCGCTTGCGT TGCGCGAAGC CACAACGCTC GATCAGGAGT GGAGCAAGCG AGCGGCGGTT
GCCGACTCCG AACAACGCCG GATCGATGGC AGCATCGCCA CCCATCAGGC GCGCCGCGCC
GATCTGGCGA GTCGTCGCTA CCGTTTCTGG CTGGCGGTGA TTGAGGTGGA ACTTGCGCGC
CTGCGCGATA CACGCGCGCC AACAGGCGTA GCGGCAATCT GGGTCGGTCT GACGCGCACA
TGGTCGCCGG CTGCCGATGC GTTGCGCCAG ATCGAAACGC TCGAGAAGGT TCAACCGGGC
AACGTTGACT TGGCTATCCT GCGCGGGCGA GCGCTTATGG TGAATGATCA AGAGAATGAT
GCGCGCGTGG CGTTCGAGAC GGCAGCGCGG CTGGCGCCGG ATCGGCCGGA GCCGTTAGTT
TATCAGGCAA TGCTGGCGTT GCCCCGGAAT CGTGAACAGG CGCGGCAATT GCTCGAAGCG
GCAGTGGAAC GTAATCCGTC CTATTTTCCG GCGCGCGTCC GTCTGGCTGA ACTGGCGGAG
GAAGAGCAGC GCTGGGAAGA GTCCATCGCG CAGCGGCGTT GGTTGGCTGA ATACCACGCG
GGGGCGGACG AAGCGCTGGC GCTGGCGCGC GCGCTTCGCC TGAGCGGCCC GAACGGGTAT
GCGGAGGCAG AGCAGATTCT GATGCCGCTG GTGGAACGGA ACCGGGCTGC TGCGATCATT
GAGATGAGTC GACTTTACCG TGATGCAGGA CGTCTCGATG CAGCGCGCAA TGTGCTGGAG
CGCGGGCAGC AGAATACCGC GCGCAGCGCG CGAGCCTATG CCGATATTGC CCACGAATTG
GGGCTGGTGT TGATCGATCT GGGAGAGATT GATCGCGCTG AGCGTCAGTT TGAAGCAGCA
ATCGGTTCAA ATCCGCGCCA TGTTCGATCT CATCTGATGC TGGCGCAGTT GGAGCGGCGT
AAGGGAAATG ACCGCGCTGC GGCGCGGCGC TACGCTGCCG CTCTCGACGC TGGCGCCAGC
GATCCGGCAG TGCTCGATCA GATTGGCATG ACACTGATCG AACTCCGCGA GTATGCTCCT
GCGGTGACCG CCTATGAGCG CGCGATTGCG CAGCAACCAG GCAATGCGAT ATTTCGCTAT
CGCGCTGCGC TGGCGTATCT GGGGATTGGG CGTCTCGATG CCGCCGATGA GTCGGCGCGG
AGGGCGCTAG AGCGGCAACC GATCTATCCG GAAGCGCTGG TTCTGTTGGG GGATATTGCG
CTTCAGCGCG GTGATTCGCA GGCAGCCAAT CAGCAGTACC GCGCGGCGCT CCAGCAAAAT
CCGGCGCTAG CGGCGGCGCA TATCGGTCTG GGGCGCGTGG CGGCAGTTGG CGGCAATTGG
TCGATTGCTG CGGGGCACTT TCTGAATGCG GTACAGGCTG ATCCGCAATC GCCCGATGCG
TTCCTCTGGC TCGGCGAGGC GCGCGTGCGC GTTGGCGACG TTGACGACGC TATCAGTGCA
TATCAGCAGG CGCTTCAGTT GCGCAGCGCT TTTCCGGAAG CGCTCTTTGG TCTGGCGCAG
GCGCAGTTTG GCGCCGGTCG CATCGACGAG GCGTTACGCA ATGTCAATCG TGCGCTGGAG
CAACGATCGC GCTATGCGGA GGCGTTCTTG CTGCTGGGGA AGATCTATGA ACAGCAGGGA
TATAGCACGC GCGCGCTCGA CGCCTATAAA CAGGCTGTCG ATGCCAATCC GCGTCTGGCT
GAACCTCACT TTCGTCGAGC GTTGCTCCTG ATCCGCGCGG ACCGATTGAG CGAGGCGCGC
GATGACCTCG AAATCGCTGC GCGCCTGGAA CCCAATTTCG CCGAAGCACA CTATTGGTTG
GGACGGGTCT ATTTTGCGCA GCGCAATTTT CAGGCGGCGG TCAATCGTTT TCGCGAAGCG
GTCAATCGGC GCAACGGCAA CTACCCTGAA GCGCGATATT ATCAGGGACG CGCGGAAGAG
CAACTCGGAG ACCTGAATGC GGCGATTCGA TCATTTGATA CGGTCGCCAA TCAGAACGAC
GACGCGCTGT GGGCGAATGA AGCGCGCGCG GCGCTGGCAC GCCTGAGCGA TCGCTAG
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| Protein sequence | MQALITALVL LVIVVVALAL LPSLRAQLRF WVQTARAQVL RHARLVRSAT IISSSGEEIV
VPDAVRAESP WTGRVRGWAS GARLPSILTG VLVVTLIVLG LPRLLPSARV DELIVLVAPF
SEPGGVPGAT GRAVAQELVD VLTATAGSGV AIRLIDAPPA DQAAALALLR ENRADMIIVG
EIAPGGMLDS ATLTPVLIYA PGGIQAFASL EGYAGRFALP TVYPLATQPI NGRVVLPRLV
RALADYNSGQ YNAAVTAFDA LEREQPALRP GLLRALRAMT WWARGNYEQS MSEFRRAIAA
MPDAPPTELA RLYVSLGAVQ HDMSDPAARD SFNQAIALLQ GQDLGELRYN LALEELRSGD
PAAAAVSLEQ ARQLLPPSTS LLVALAEAYR LSGRFDAASE TLAAATRQIG ADDRVVPFDL
RPLMNARLRA HVQSERALLH MARMVNARGP LLWELDLIAT PSEPDRAQRE TDLNQILNDM
SLALREATTL DQEWSKRAAV ADSEQRRIDG SIATHQARRA DLASRRYRFW LAVIEVELAR
LRDTRAPTGV AAIWVGLTRT WSPAADALRQ IETLEKVQPG NVDLAILRGR ALMVNDQEND
ARVAFETAAR LAPDRPEPLV YQAMLALPRN REQARQLLEA AVERNPSYFP ARVRLAELAE
EEQRWEESIA QRRWLAEYHA GADEALALAR ALRLSGPNGY AEAEQILMPL VERNRAAAII
EMSRLYRDAG RLDAARNVLE RGQQNTARSA RAYADIAHEL GLVLIDLGEI DRAERQFEAA
IGSNPRHVRS HLMLAQLERR KGNDRAAARR YAAALDAGAS DPAVLDQIGM TLIELREYAP
AVTAYERAIA QQPGNAIFRY RAALAYLGIG RLDAADESAR RALERQPIYP EALVLLGDIA
LQRGDSQAAN QQYRAALQQN PALAAAHIGL GRVAAVGGNW SIAAGHFLNA VQADPQSPDA
FLWLGEARVR VGDVDDAISA YQQALQLRSA FPEALFGLAQ AQFGAGRIDE ALRNVNRALE
QRSRYAEAFL LLGKIYEQQG YSTRALDAYK QAVDANPRLA EPHFRRALLL IRADRLSEAR
DDLEIAARLE PNFAEAHYWL GRVYFAQRNF QAAVNRFREA VNRRNGNYPE ARYYQGRAEE
QLGDLNAAIR SFDTVANQND DALWANEARA ALARLSDR
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