Gene Rcas_3207 details

Gene Information

• Locus tag: Rcas_3207
• ID: 5540705
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Roseiflexus castenholzii DSM 13941
• Kingdom: Bacteria
• Replicon accession: NC_009767
• Strand: -
• Start bp: 4166972
• End bp: 4170445
• Gene Length: 3474 bp
• Protein Length: 1157 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 640895328
• Product: WD-40 repeat-containing protein
• Protein accession: YP_001433279
• Protein GI: 156743150
• COG category: [R] General function prediction only
• COG ID: [COG2319] FOG: WD40 repeat

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 16
• Fosmid unclonability p-value: 0.357908
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGACCGATC ATTCACCTTC GGCAGGGATG CCCGACCACG AGATGCTGGC ATATCCCTCA 
TTTGCAGCAT TGCGCGCGGC GCATACGAAC TTACTCCGCC GCCAACGCGA CGAGGGGTTG 
ACGCCATCTG TGCTGGGGCA GGCCGTCGAA CTCATTGCTC GCGGCAGCGC CGCCGGTGTG 
TTGCTCGAAG ATGAAGATGA GCGCAACGCT GCACAGGGGT TGCTCGATTA TTGGGCGACG 
ATTCTGATTC GTAAAGGGTA TGAGTCGCCC AACGCAACGC TCGAAGAGTT CGATCCGTCC 
CTCGCGCCAG AACTGGATGA TGATCACTGC CCTTACGTCG GGTTAGACCC GTTCCGTGAA 
GAAGATGCGG CTCGCTTCTT CGGCAGGCGG CGCCTGGTTG AGTTTCTGAT CAACCGGCTG 
CATGACCAGC GGATGCTGGC GCTGCTTGGT CCTTCTGGCG CCGGCAAATC GTCGGTGGTG 
CGCGCGGGGT TGATCCCTGC TCTGAAGCAG AATGCCCTGC CCGGCAGCGG CAACTGGCGC 
TACCCGCCGG TGATCACGCC AGGAGAGCAA CCGCTGCTGC ACCTGGCGTG CGTCCTGCGT 
CGTCTGAATA GTCAACCCGA TGACCTGGCG CGTGATGAGG AACTGGCGGA ACAGTTGCGG 
GACCCGCAGC AGGTGGTTGC AGCGTGTGAT GGACCTGAGC CGGTGGTGCT GGTAGTCGAT 
CAGTTGGAAG AACTGTTTAC TCTGACCGAT GACGAATCGG AGCGCCACGC ATTTGTCGAG 
GCGATGGTTG CCCTCGTGGA GCATCCATCC ACCCGGCATA TCGTCCTGAC GACAATGCGA 
AGCGACTTCG AGAGTTTTAT TGCACTCGAA CCGTCGCTTC AGCGGTGGAT GGAACGAGCG 
CGGGTTCAAC TGTTGCCGCT CAGCGCCAGT GAAATGCGTG AGGCGATTGA ACGTCCGGCG 
GAACTGGCCG GTCTCAAATT TGAGCCGGGG GTCGTCGATG CATTGTTGCA CGACACCCTC 
GGCGAGCCGG CAGCGTTGCC GCTACTCCAA TTCTCGTTGC TCAAACTCTG GGATGCGCGT 
GACCGCAATC GCGTCACGTG GGAGGCGTAT CAGCGGATCG GCGGCGGACG GCAGGCGCTC 
GCGCGCAGCG CCGATGCGCT CTACAACAAC CTCATCCCGG AGGATCAGGT GACCGCGCGC 
CGTATTCTGA TGCGCCTGGT GCGTCCTGGT GAGGGTTTGG AGATCACCAG TAATCGCATC 
CGGCGTGATC AACTCTATCG CGCCGGCGAA GCGCGTGACC GGGTGGATCG TGTGCTTGAA 
CGTCTGATCG CTGCACGCCT GGTGCGTCTC ACTCCCGGTG ACACGCCGGG GAGTGCGCAG 
ATCGAGGTCG CCCACGAGGC GCTCGTGCGC AACTGGCCCA CCCTGGTCAA CTGGCTTGAG 
GATGAGCGCG CGGCAATTGC AACCCGCCGC CGCCTGGAGG CGAAGGCGGC GGAATGGGTG 
CGGCTCGGCA GCGGCGCCGC CGGTTTGCTC GATGAGGTGC AACTGGCGGA AGCCGAACGC 
TGGTTGAATA GCGCCGAAGC CGCTTACCTG GGGTACGACG AAGCGTTGCT CGATCTGGTG 
ACTGCCAGTC GCGCGGCTAT CGATCAGGCG CGACGCACCG AGGAAGAGCA ACGTCGCCGT 
GAACTCGAAC AGGCGCAGGC GTTGGCGGAA GCGCGTCGCA TTCAGGCGGA ACAGAATGAA 
AAACTGGCAA TCGAGCAGGG GAAACGCGCC GAAGCCGAAG CGCGCTCGGC ACAACGGTTG 
CGCCTGGTTG TCATGACGAT GACCTTTGCC CTGATCGGCG CTCTTATATT GGGCATCATG 
CTCTTTGTGC AGCAATCGCA ACTCAGAGCA ACCGCTTCCG AACTGGCGAC CCAGGTCGGT 
ATCTCCAACC TGGCGCTTGT CACCGCCCAG GTCGCTGTTG AGAACGCCCG CGTCGCCGCC 
AACCGGGCGC GGATCGCCGC CGCCACCTCG CAGGCTGCCG AAAGCCTGGC GCTGCTGCGC 
GGCACTCAGG CGGCGCTCGC GGCAACGCAG GAGTCATACG CGCGTCGGAC TGCCGAGTCC 
CTCGTCCCTG CACTCGAACG ACAGGCGCGT CAGTCCCGCG CCGGTCAACT TGCGGCGCTG 
GCACAGGCGG AACGTGAAGA TCGCCCGGTT CTCAGCCTCC TGCTGGCAAT CGAAGCAGTG 
CAGGTGACGC TTCAGAAAGG CGAAGCGCCT GTTCCGATCG CTGATGCCGT TTTGCGCGGG 
TCGCTCGCGC GCATCGGCGG CGTGGGGCTG TGGATTGGCA GTCCGGTGGT CGCTGCCGCA 
ACCAGTGACA ACGGCAGCGT GGCTGCGCTC CTAACCGCCG ATGGTACGCT TCAGGTCTGG 
AACCTGACCA ATCTGAGCCG GTCGCCGCGC ATTGCCAGCG CCCCTGGTTC ACCAACCCTC 
CTGGCGCTTT CGCGCGACGG CGCGCGTCTG GCGACAGCCG GCGCCGATCC GACCAGTCTT 
CGCCTCTGGG ACCTCGCCGG CACGACGTTG ACCGCGCGCG AACTCGCAGG ACCGGGAGGA 
ACCAACACCG CCATGGCGCT CAGCCGCGAT GGGCGCCGTC TGGCAATCGG CGATAACCAG 
GGCGCCACCT TTGTGTACGA TCTGACGAAT CTTTCGGCGT CGCCGCAGCG ACTAAGCGGT 
CTTGGCGGTC GCAGCGGCAT TCGTTCGCTC ACGTTCAGTC CCGATGGACG TCTGCTGGCG 
ACCGGCAACG ACGATAGCCA GGCGCGACTC TACAATCTCG CCTCCGGTTC TGGAACGTAC 
ACGCGCGAGC GCACCCGCGG CGCGCTGACC TCGATCACCT TCAGCAGCGA TGGACGCTGG 
CTCGCCTATG GCAGCGCAGG CGGACAGGTG CGCCTCTGGC GTCTGAGTGG CATGCAGTTC 
GACTCGGTCT ATGTGCTGCT TGGCTTGACA GCGCAGGTGA CGGAAGTGCG CATTGCGTCC 
GGGAATGCGC TGGTCATCGC CGGCAGCGCC GACGGAACGA CCTGTCTCTG GGACCTCGAA 
GCACGCAACG ATAACCGGGC GCGTGTGGTG TTGCGCGGTC AGAGCGCTCA AATAACAGGA 
TTGGCGTTGA ACGGCGATGC CAGTCGTCTG GCGACTGCCA GCGCCGATGG GCAGGTGGCG 
CTGTGGGACC TGAATGTCGC CGATCCTGGT GTCAAGCCGG TGATCCTCCG CGGTCACGAC 
GGCGCAGTCA CCGGTGTGGC GATACCGGTG AACACTTCGC TGATGCTGAC CACAGGCGTC 
GATGGGATGG CCCGCGTTTG GAACCTGAAT GCGCCGCTCT CTACTCCTGA GTCATTACCG 
CAGGCAGGCG CTGACCTGAT CAACATCGCC TGCCGCACCG CAGGGCGAAC GTTGTCGGAA 
AGCGAGTGGA ACACGTACTT CGAGGGAATG CCGTACCGCC CTTCCTGTCG ATAA 

 

Protein sequence

MTDHSPSAGM PDHEMLAYPS FAALRAAHTN LLRRQRDEGL TPSVLGQAVE LIARGSAAGV 
LLEDEDERNA AQGLLDYWAT ILIRKGYESP NATLEEFDPS LAPELDDDHC PYVGLDPFRE 
EDAARFFGRR RLVEFLINRL HDQRMLALLG PSGAGKSSVV RAGLIPALKQ NALPGSGNWR 
YPPVITPGEQ PLLHLACVLR RLNSQPDDLA RDEELAEQLR DPQQVVAACD GPEPVVLVVD 
QLEELFTLTD DESERHAFVE AMVALVEHPS TRHIVLTTMR SDFESFIALE PSLQRWMERA 
RVQLLPLSAS EMREAIERPA ELAGLKFEPG VVDALLHDTL GEPAALPLLQ FSLLKLWDAR 
DRNRVTWEAY QRIGGGRQAL ARSADALYNN LIPEDQVTAR RILMRLVRPG EGLEITSNRI 
RRDQLYRAGE ARDRVDRVLE RLIAARLVRL TPGDTPGSAQ IEVAHEALVR NWPTLVNWLE 
DERAAIATRR RLEAKAAEWV RLGSGAAGLL DEVQLAEAER WLNSAEAAYL GYDEALLDLV 
TASRAAIDQA RRTEEEQRRR ELEQAQALAE ARRIQAEQNE KLAIEQGKRA EAEARSAQRL 
RLVVMTMTFA LIGALILGIM LFVQQSQLRA TASELATQVG ISNLALVTAQ VAVENARVAA 
NRARIAAATS QAAESLALLR GTQAALAATQ ESYARRTAES LVPALERQAR QSRAGQLAAL 
AQAEREDRPV LSLLLAIEAV QVTLQKGEAP VPIADAVLRG SLARIGGVGL WIGSPVVAAA 
TSDNGSVAAL LTADGTLQVW NLTNLSRSPR IASAPGSPTL LALSRDGARL ATAGADPTSL 
RLWDLAGTTL TARELAGPGG TNTAMALSRD GRRLAIGDNQ GATFVYDLTN LSASPQRLSG 
LGGRSGIRSL TFSPDGRLLA TGNDDSQARL YNLASGSGTY TRERTRGALT SITFSSDGRW 
LAYGSAGGQV RLWRLSGMQF DSVYVLLGLT AQVTEVRIAS GNALVIAGSA DGTTCLWDLE 
ARNDNRARVV LRGQSAQITG LALNGDASRL ATASADGQVA LWDLNVADPG VKPVILRGHD 
GAVTGVAIPV NTSLMLTTGV DGMARVWNLN APLSTPESLP QAGADLINIA CRTAGRTLSE 
SEWNTYFEGM PYRPSCR