| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3188 |
|---|
| Symbol | |
|---|
| ID | 5540686 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 4145378 |
|---|
| End bp | 4146436 |
|---|
| Gene Length | 1059 bp |
|---|
| Protein Length | 352 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640895309 |
|---|
| Product | aspartate-semialdehyde dehydrogenase |
|---|
| Protein accession | YP_001433260 |
|---|
| Protein GI | 156743131 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0136] Aspartate-semialdehyde dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00978] aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00406547 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.076183 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACGCA AACGAATCCC AGTCGCTATC CTCGGCGCAA CCGGCGCCGT TGGTCAGCGG
ATGGTGCAGT TGCTGGAGAA TCATCCGTGG TTCGAGATTG TTGTCCTTAC CGGATCGGAC
CGCACGATTG GGCGTCCTTA CGGCGAGCTG GTGCGCTGGA TTCTCGATAC GCCTATCCCG
GAGCGGGTGG CGAACATGGT CGTGCAACCA ACCGAAGAGG TGGCTGATGT AGCAATTGCG
CTTTCGGCGT TGCCGACGGA TGTGGCGCGC GCGATGGAGC CGCGCTGGGC GGAGCGCACC
GCAGTCTGCT CAAATGCGTC CGCCTACCGC GCGGTTGCCG ATGTGCCGCT GATCATCCCG
GAGGTCAACC CTGATCAACT GGCGCTGCTG GAGCGTCAGC GCGCACAACG CGGCTGGAAG
GGGTGCCTGG TGACCAACCC GAACTGCGCG ACGATCAGTG CGGTGATGCC CCTCAAACCG
CTCCACGATG CGTTTGGTTT GCAGACGGCG CATATCAGCA CGCTTCAGGC AGTCTCCGGC
GCCGGATATC CAGGGGTGGC ATCGCTCGAC ATTATCGACA ACATCATTCC GAACATTGCC
GATGGCGGCG AAGAAGCCAA GATCGAGGCA GAGCCACGTA AATTGCTGGG AAACGTTGCG
GATGGTCAGG TGGTCGAGGC GCAGATTGCC ATCAGCGCGC AGGTGACGCG TGTGCCGATC
ATCGATGGTC ATACGGCGCT GATTGCTGCG TCGTTTGCGC AGAAACCATC ACCGGAAGAG
GCGCTTGCCG TCCTCGAGGC GTTCATGCCA CCTGAGATTG TGCGCCATCT ACCCTCGTCA
CCGGAACGCG CCCTGATCGT TCACTGCAAT GGCGATCGCC CGCAACCGCG ACGCGACCGC
GACGCCGGGC GCGGGATGAG CGCCAGTGTC GGGCGGGTGC GTGCCTGCCC GGTGCTGGAC
CTACGCATGG TCGCGTTGTC GCACAACACC ATCCGCGGCG CGGCTGGCGG CGCCATTCTC
AATGCCGAAT TGCTCGTGGC GAGCGGGATT GTATCGTGA
|
|---|
| Protein sequence | MTRKRIPVAI LGATGAVGQR MVQLLENHPW FEIVVLTGSD RTIGRPYGEL VRWILDTPIP
ERVANMVVQP TEEVADVAIA LSALPTDVAR AMEPRWAERT AVCSNASAYR AVADVPLIIP
EVNPDQLALL ERQRAQRGWK GCLVTNPNCA TISAVMPLKP LHDAFGLQTA HISTLQAVSG
AGYPGVASLD IIDNIIPNIA DGGEEAKIEA EPRKLLGNVA DGQVVEAQIA ISAQVTRVPI
IDGHTALIAA SFAQKPSPEE ALAVLEAFMP PEIVRHLPSS PERALIVHCN GDRPQPRRDR
DAGRGMSASV GRVRACPVLD LRMVALSHNT IRGAAGGAIL NAELLVASGI VS
|
|---|
| |