| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3184 |
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| Symbol | |
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| ID | 5540682 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 4138418 |
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| End bp | 4140223 |
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| Gene Length | 1806 bp |
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| Protein Length | 601 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640895305 |
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| Product | peptidase M61 domain-containing protein |
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| Protein accession | YP_001433256 |
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| Protein GI | 156743127 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3975] Predicted protease with the C-terminal PDZ domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.152326 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGTTAG TCTATTCCAT CTCGATGTTG CGTCCCCATA CTCATCTGTA CGATGTAACG
CTCGATATTC CCTCTGTTGA CGGTCCCACG CTTGATCTGG CGCTGCCGGC CTGGACGCCG
GGATCGTATC TGATCCGCGA TTATGCCCGC CATGTGCAGC AGTTCGCTGC TGCCAACGAT
CGCGGCGAAC CGTTGCCCTG GCAGAAGATC GATAAGACCA CCTGGCGCAT TATGGCGAGC
AATGCCCGTT CCGTGCGTGT CACCTATCAG GTGTATGCGT TCGATCTGAG CGTCCGCACT
AGCCACCTCG ATGGCACGCA CGGTTATTTC AACCCGTCCA ATCTCTGCAT GTACCGTTGC
GGCCATCTGC ACGAGCCATG CGTCGTCCAT GTCCAGACGC CGCTTGAATG GCGTGTAACG
ACCGGGCTGG AGCGGATCGA TGGCGCCGGG GAGCGCACTG GTTGGGCGAC ATTTCGCGCC
AACGATTATG ATGAACTGGT TGACTCGCCG TTCGAATGCG GAACGCACCG TCTGCTGACC
TTCGAGGTCG ATGGCATTCC TCACGAAATC GCGCTCTGGG GACGCGGCAA CGAAGATGAG
CGTCAGATTC TCGCCGATAC TCGCACGATT GTCGAAACCA CACGTGCCAT GTTTGGCGGA
TTACCCTATC AGCGTTATGT CTTCATCGTT CATCTGGTCG ATGGCGAATA TGGCGGTCTT
GAACATCGCA ACAGCGTCTC GAACATTGTG GATCGCTGGG GCTTTCGTCC TGCACGTTCG
TATGAGCGAT TTCTGGCGCT CACAGCTCAT GAGTTTTTTC ACGTCTGGAA TGTTAAGCGC
ATTCGTCCTG CGCCGCTTGG TCCGTTCGAC TACGCGCGCG AAAACTACAC CCGCCAGTTG
TGGGTGATGG AAGGAATCAC CAGTTATTAC GACCATCTGA TTCTGCTGCG TGCCGGCTTA
ATCAGTCGCG AACGGTATCT CGAAACGCTC GCCGACGACA TTAAGTTATT GCAGAGCCAG
CCGGGACGGG CGCTTCAGTC GCTGGAACAG AGCAGTTTCG ACGCCTGGAT TAAGTTCTAT
CGCCCTGATG AGAACGGACC GAACAGCAGT GTGTCGTACT ATCTGAAAGG CAGCCTGGTG
GCGCTGCTGC TCGATCTGGA GATCCGGCGG CGCACCGGTG GGGCGCGTTC GCTCGATGAT
GTCATGCGCT ATCTGTATGC TGAATATGCC GGCGATCAGG TGCACGACCT CTACAGCGGC
GCATTTGCCA AGCGCCCTGG CTTCGATGAT GATGACGGGT TCTGCCGCGC GGTGGAAGCA
GTCGCCGGCG AGGAGGGCGG GGCATACCGC GCACTGCTGG CGCGCGCCGT CGCCAGTACG
GATGAATTGG AGTATGATCG CGCATTCGAT GCCGTGGGGT TGCGCCTGGT CTGGGGGCAT
TCGCTCGAAA AAGAGAACGA TCATCTCCCC GCCTGGCATG GGTTACGCCT CAAAACGGAT
CATGGTCGAC TCAAGGTCTC GGTGGTGCTG GCAGGTGGAC CCGGCGAGTC TGCCGGGATT
TATGCCGGTG ACGAACTGAT CGCGCTGGAT GGCGTTCGTA TCGACGAAGA GCGCCTCAAA
GCGCGGCTGG CGGAACGTAA ACCTGGCGAT ACCGTGCTGT TCAGCCTCTT TCGCCGCGAC
GACCTGCTCC ACATCCCGCT GCAACTTACC GAATCTCCGC CTGATACCCT GACGATCACG
CCGGTCGAAT CGCCGACAGA AGAGCAGCAA CGGCTCCTGG ACGGGTGGCT GAACGTTGCC
CGTTGA
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| Protein sequence | MPLVYSISML RPHTHLYDVT LDIPSVDGPT LDLALPAWTP GSYLIRDYAR HVQQFAAAND
RGEPLPWQKI DKTTWRIMAS NARSVRVTYQ VYAFDLSVRT SHLDGTHGYF NPSNLCMYRC
GHLHEPCVVH VQTPLEWRVT TGLERIDGAG ERTGWATFRA NDYDELVDSP FECGTHRLLT
FEVDGIPHEI ALWGRGNEDE RQILADTRTI VETTRAMFGG LPYQRYVFIV HLVDGEYGGL
EHRNSVSNIV DRWGFRPARS YERFLALTAH EFFHVWNVKR IRPAPLGPFD YARENYTRQL
WVMEGITSYY DHLILLRAGL ISRERYLETL ADDIKLLQSQ PGRALQSLEQ SSFDAWIKFY
RPDENGPNSS VSYYLKGSLV ALLLDLEIRR RTGGARSLDD VMRYLYAEYA GDQVHDLYSG
AFAKRPGFDD DDGFCRAVEA VAGEEGGAYR ALLARAVAST DELEYDRAFD AVGLRLVWGH
SLEKENDHLP AWHGLRLKTD HGRLKVSVVL AGGPGESAGI YAGDELIALD GVRIDEERLK
ARLAERKPGD TVLFSLFRRD DLLHIPLQLT ESPPDTLTIT PVESPTEEQQ RLLDGWLNVA
R
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