| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3183 |
|---|
| Symbol | |
|---|
| ID | 5540681 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 4136573 |
|---|
| End bp | 4138189 |
|---|
| Gene Length | 1617 bp |
|---|
| Protein Length | 538 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640895304 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001433255 |
|---|
| Protein GI | 156743126 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0433] Predicted ATPase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.837382 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.234519 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGGTGT TGAATCGAAA ACGGATCGGC GTTATCACCG GCGGCTCGCT GATCGAGGGG
CTGCATGCCC GCCTCGACAG CAGCGTGAGC GTCGAAGATG TGCGCGTCGG TCAGTTCGTC
GTTATTCAGG GAGAGAAGCA CAACTTCTTC TCGATGGTCA CCGATATTGC GCTCGAAGCG
ACCAACCGCA CCATTCTTAC CCGCCCGCCA GATGGCGACC GTTTCTTCCA CGAGGTGCTG
GCGGGCACGG CAACCTACGG CGTGGTGCAA CTCAAACCGA TGCTCATGTT GCCCCACGAT
CTGAATCAGG AGTTGCGCCC GGTCAAAACC GTGCCGTATC ACTTTGCCCC AGCACTCGAA
GCGGACGCGC AGGATTTCAC CCGTGTCTTT GGCGCAGACG ACGCAACGCA CTTCGAGATT
GGACGACCAC TCGACATGGA TGTGCCGGTC TGTGTGGACC TCAACCGCCT CGTGGAGCGC
TCAAACGGCA TCTTCGGCAA AAGCGGCACC GGCAAGAGTT TTCTTACCCG TCTGATCCTG
TGCGGTATCA TCCGTTCCGG AACGGCGTCG AACCTGGTGT TCGACATGCA CAGCGAGTAC
GGCTGGGAAG CCACATCAGA GGATGGCAAA TTTGTGAAAG GATTGCGCCA GTTGTTCGGA
CCACAGGTGC TGATCTTTTC GCTCGATGCC GAGTCGTCGC GCAAACGTGG CGTGAGTGTG
GACGAAACCA TCACCATCGG TCTTGATCAG ATCGAGGCGG ACGATATTCT GCTCCTTCAG
GACGAACTGA ATCTGACCGC CACCGCCGCC GAGTCCGCCT ATCTGCTGGT GGATCGGTAC
AAACAGGAGT GGCTGAAGAC GCTCCTGGGC ATGAGCAGTG CCGACATTCA CGAATTTGCC
GAACAAGCCG GGGCGCACGC CGGCGCGATC AGCGCACTCA AACGCAAACT GGATCAGATC
CAGCGCCTGG GATTTGTCCG AGAGCAGGCG CCGCTGGATG CCATTGATCG CCTGATTGAG
CATCTGGCAC GCGGGAAGCA TGTGGTGCTT GAATTCGGGC AGTACCGCAG CGCGCTGGCG
TATATGCTGA CAGCGAACAT CATCACGCGC CGCATCTATC GGCGCTGGGT CGAACAGACC
GAAACCTTCC TGCGCACCAA GAACACCGCC GACAAACCGC GCCAGTTGGT GATCACGATT
GAAGAGGCAC ACAAATTTCT CAATCCGGTT GCCGCGCGCC AGACGATTTT CGGCACGATT
GCGCGTGAGT TGCGCAAATA CAGCGTGACA CTGCTCATTG TCGATCAGCG CCCCTCTTCA
ATCGACCCAG AGGTGATGAG TCAGATCGGC AGTCGGATCA CAGCACTGCT CAACGATGAC
CGCGACATCG ACGCCGTTTT TACCGGCGTG AGCGGTGCCG CCGGTTTGCG CGCCGTGCTT
GCCAGCCTCG ACACGCGCCA GCAAGCGATG GTGCTGGGAC ACGCCGTGCC GATGCCTGCC
GTCATTCGAA CGCGCCCCTA TGATGCTGCA TTCTACAAGG CAATGGGGTT TGTCGAAACG
TCCATCGCCG AGCGGCGAAA CCGCGCGTAT GCGGAGATGG ATGAGTTGTT TCCGTGA
|
|---|
| Protein sequence | MSVLNRKRIG VITGGSLIEG LHARLDSSVS VEDVRVGQFV VIQGEKHNFF SMVTDIALEA
TNRTILTRPP DGDRFFHEVL AGTATYGVVQ LKPMLMLPHD LNQELRPVKT VPYHFAPALE
ADAQDFTRVF GADDATHFEI GRPLDMDVPV CVDLNRLVER SNGIFGKSGT GKSFLTRLIL
CGIIRSGTAS NLVFDMHSEY GWEATSEDGK FVKGLRQLFG PQVLIFSLDA ESSRKRGVSV
DETITIGLDQ IEADDILLLQ DELNLTATAA ESAYLLVDRY KQEWLKTLLG MSSADIHEFA
EQAGAHAGAI SALKRKLDQI QRLGFVREQA PLDAIDRLIE HLARGKHVVL EFGQYRSALA
YMLTANIITR RIYRRWVEQT ETFLRTKNTA DKPRQLVITI EEAHKFLNPV AARQTIFGTI
ARELRKYSVT LLIVDQRPSS IDPEVMSQIG SRITALLNDD RDIDAVFTGV SGAAGLRAVL
ASLDTRQQAM VLGHAVPMPA VIRTRPYDAA FYKAMGFVET SIAERRNRAY AEMDELFP
|
|---|
| |