| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3182 |
|---|
| Symbol | |
|---|
| ID | 5540680 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 4131826 |
|---|
| End bp | 4136076 |
|---|
| Gene Length | 4251 bp |
|---|
| Protein Length | 1416 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640895303 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001433254 |
|---|
| Protein GI | 156743125 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCATC AGATTCGCGG TCATCGACTC CTTCTTGCCA CTGTAATGCT GATCGCGCTC
AGTGCATCGA CGCTGACACC GCCGTCGGCG CCGTTCCAGG CGCTGATCCT TGATCTGCCG
TCGGTTGCTG CCCAGAGCGG CGCTCCAATC GGTCCGCAAC CGGGAGATGT GTTCCGGCAG
TTCCAGGACG ATTCGACGTT TCGTCAGACG TCGGTGTGTA ATGCGTCAGG CACGCGCTGC
GGTTCCGTGC CTTCGGAGCA GACGCGACAG GCGCGGAATG TTGATCTTGC CAACGCCGTG
CGCGCCGAGG CGATCTTCGA ATACTGGGGC GGGCACCTCG CATCGACGCA GCAGGAATTC
AATGTCAACG GCGGTCCCTG GACGCCCTAC CCCGACATTC AGGGTATTCC GCCCGATACC
TTGCCGACCT GCTACTTTCG CGCGCCAACC AATGCCATCG CACCGTTGCC GTTGAGCGGA
ACCGGCGGCG TGCGACCTCC CGGCAGCACG GGAAATACCG TCACGGTGAA TTATCGCTAT
CGTATCGGTC CGCAGCGGTC GTTGCCGCAG TGCGCGTCGG GGACGAATTT CTACTGGGGC
AATATGTGGA TCTATGAGGT GACGACGCGC ATCTACTACA ATTCAAGCGT TGTGCGCCCC
GATGGTGCGA TCACCTCGCC GGTAGACGGC GGGGTGATTA CCGAGAACTT GAGCGCCAGC
CAGTTCCCGC AGATTAGCGT GAGCGCGCAA GCGCCGTCCG GTCGCACGAT TGCGCGTGTG
GACCTGATCG GCAATTATCT CGATTACGAT TGGGACGGCG ACGGCGTGCT GCGCGAATGG
CATTACGCGC TGCGCCACGG CGTCTGGGAA CGCACGATTG GGACGCGCAC CTCGCCGTCG
AGCGGCTCCA ATACGAACGG GGTCTACACG TTTACCTGGA ATACGGAATG GGTCCCCGAT
CAGGATCAGC CGGTCCAATT GATGGCGCGC ATCACCGACA ATACCGGCGT CAGTTATATG
ACTCCGGCGG TGACAGTGAC ATTCAATCGT GTTGGGCGCA GTGTGCGCAT GTACAACACC
TGGAGCGACT ACTACGGGCA GCGGGTGTTC GGTCCGCCGC GCAATTTTGG TTTCAACACC
TATCGGCAGC CGCGCATCGG CAAGACGGCA TTCATATCCA TTCCCGATTC GCTCACGAAC
GCAACGCGGG CGCGCTTTAT TCTCTACAGT TGGAGTGGAC GCTCATCGGT TTCGGATTCG
CGAACAACGG TTGCCATCAA CGCATTCTCG ATCTGGTCCG ATAATTCTTT TGGCGTGTTC
CACGATTACA ATTTTGATGC GCGCGTCCTG ACGAATCCAC GCGAATTTCT CAATCAAGGC
GATAATATTT TGCGTATCTG GTCGAATCGC AATGATCATG AGCTTGAAGT GCTCTGGCCC
GGTCCGGCGC TGTTCGTTGA GTACAGTTCG CCGCCGGAAA CGCCGCCGCT GATTGCCAAC
GATACATCGC TCACAACCCA GGAAGATCAA CCGCTGGCTG TGACCCTGCC GGTCGGCAAC
GATGCGCGTG CTGTGTTGCA GTATACGATT GTGACGCCGC CGATGCTCGG CACGCTGCGC
GGTCTTGCGC CTGACCTGAT GTATCTTCCC AACCGCGATG TCAGCGGCGC CGATCGTTTT
GTCTTCCGTG TCGACGACCA GTATGGGCGC AGCGCAACAG CAACGGTGTC GATCGATATT
CAAGCGGTCG ATGACCCGCC GAACATCCTC CTCGGTGAAG GCGCGCTGCT CAATCCGGGA
GATGTGTTTA CCCGCACCGG CATCGTCCGC GATCCGGACT CGCCGACTCT GACGGCAACG
GTTGATTATG GTGACGGCAG CGGTGCGCAA TCGCTCGCTC TCAACCCGGA TGGCTCGTTC
CAGTTGAGTT ACCGCTATCG CAATGGTGGG CGCTTCCCGC TGACGGTGAG CGTCAATGAT
GGCGCGCAGA CCAGTGTTGC CACAGCGACC ATAACGGTGC TTACTCCTGG TACGCCGCCG
CCAGGCGACT GGCATCTGAC CGGATGGCGC TACCGCGTGC CGCTGGAAGC GCGTTCAGGC
GCATATCCGC GCGTCGATTA CGTCGCTGAG TTTGATGTCA ACTTTACGGC TGCGCTTTCA
CAGGCAGGCG GCAACGGCGC GATCCTGCGC GACTCGATCC GTGTTGTCGA GGTTGATGCG
GACGGCAATC TCATCGATCC CATGGTCGTC TATCAGTTCG ACCCGGTCAG CGCGTACAAT
CCGATAACAA ATGCGCGCGG AACACTGCTC GTGCTCTTGC GGGGACGCAC TGAGGCGAAT
GTCACCCGCC GCTTCTTCGT CTATTTCGAG ACCCAGGGGC GTTTTGCGCC GCCGGATTTC
ACGCCGCTCA CGGCGGTTGT CACACCGACG ACGACCTACC GGCGCGATCT TGCAACCGTC
ATTGAGACGC GCAACTCGAC CGGTCAGCGC AGCGCGATGT TCTATTACTC GCTCAATGGC
GGCGCGCTGA TCAGCATGTT CGACCGCTCG GATGCGGACT GGATTTCGTA CAATCCGGCG
GCTGACTCGG CAGGCGCCTA TCGCGGTATT CCAAATCTTG GCCCGGTTTT CCATCCAGGC
TACTACAACG TCTTCCCCAT TCCAAGCGCT TCGGGTCCGC TCCAGGGGAA TGAACTCAGT
ACGAACCAGC GTTCGACGAC TACCGTTGAA CAGGAGGGGG TGCTGCGCAC CGTTGTGCGC
TCGGTCAGCA GCAACAGACA ATGGGAAGCC GTCTGGGAGT TCTTCCCCAA CAGTGTGCGG
ATGTCGGTTG TGCGCACACC ACTGTCCGGT TCGACGCCGC TCTCCTACTG GTGGTTGTAC
GAGGGCACGC CGGGCGGAAC ACTCAATGAG GGCGACCGCT GGGTGCGCGG CGATGGGTTG
TCGGGGAATG CCGTCGATCC CAGTTTCGCG TACAACGAAC GGTTCCATGC CGACATCAAC
GGTCCGGAGT GGGTCTATTT CCGCGCTGGC GAGTCGGCGC TGGGAGGACG CGCGCTCTGG
TTGGCGCATC ACGATGATGC CGATACGACG ATTGAAATGT ATCGTCAACA GAATGACTCT
TCCGGCTGGC AGAATAGTAT GACCGTCTTC GGGTTCGGTC GGCGTGAGTG GACCGGATCG
GCGCAAACGT TGCAGGCGGA GTTACGAGGG CAGCGTCGCT TCTCTCTCGG CTTTGTGGAT
AGCGCGCCTC TCAATTTCGA TAGCGCGTTT GGGCGCGAGA TTGAAGGGCG CTATCGCAAT
CTGGAAGTGA TCGTCGGTCG AGGTGAGCGC CTCGTGCCGA ACCTTGCGCC GTGGGCGCCG
GGTGAAACAT ACTTTACGCG CCCGGGTCGC GCGCTTCAGG TTCCGGCGCC CGGTGTGCGC
GCCAACGATA GCGATGGCGA CGGTGATCCG TTCCAGATCA CGTTGACTGA CGAGCCGCTC
AGTGGCACGC TGGTGTTCAA CAGTGACGGG TCTTTCACGT ATGTGCCCGC CGAAGGGTTT
ATCGGCGAAG ACTCGTTCAC CTATACTGCG AGCGATGGCA TCCTCAGCGC GCCGCCAACA
ACGGTGATCA TTCGGGTCAC CGCCAATCAA CCGCCGACGG CGCAATCCAG CAATTGGACG
ACGACCAACC GGCAATCGCT CAGCGTGCCG GCGCCGGGTG TGCTGACCGG CGCGAGTGAC
CCGGACGGCG ATCCGCTTAC AGCGGTGCTG ATCGGCGAAC CGGCAAACGG GACGCTGACG
CTCAATGCTG ATGGGTCATT CACGTATACG CCCCAGCCAA CGTTCGTGGG AGTGGATACA
TTCCAGATAG CGGCGTTCGA TGGCGAGGAT CGGTCGGCGC CGGTGGGTGT GCGCATCACA
GTGCGGAAAG AGAACCGTCC GCCGACGGCG CAATCCAGCA ATTGGACGAC GACCAACCGG
CAATCGCTCA GCGTGCCGGC GCCGGGTGTG CTGACCGGTG CGAGTGACCC GGACGGCGAT
CCGCTCACAG CGGTGCTGAT CGGCGAACCG GCAAACGGGA CGCTGACGCT CAATGCTGAT
GGGTCATTCA CGTATACGCC CCAGCCAACG TTCGTGGGAG TGGATACATT CCAGATAGCG
GCGTTCGATG GCGAGGATCG GTCGGCGCCG GTGGGTGTGC ACATCACGGT GACGGCTGCG
CCTGGATCGA CACCATCGTA CCAGGTGTTC CTGCCGCTGG TGCAGCGCTG A
|
|---|
| Protein sequence | MNHQIRGHRL LLATVMLIAL SASTLTPPSA PFQALILDLP SVAAQSGAPI GPQPGDVFRQ
FQDDSTFRQT SVCNASGTRC GSVPSEQTRQ ARNVDLANAV RAEAIFEYWG GHLASTQQEF
NVNGGPWTPY PDIQGIPPDT LPTCYFRAPT NAIAPLPLSG TGGVRPPGST GNTVTVNYRY
RIGPQRSLPQ CASGTNFYWG NMWIYEVTTR IYYNSSVVRP DGAITSPVDG GVITENLSAS
QFPQISVSAQ APSGRTIARV DLIGNYLDYD WDGDGVLREW HYALRHGVWE RTIGTRTSPS
SGSNTNGVYT FTWNTEWVPD QDQPVQLMAR ITDNTGVSYM TPAVTVTFNR VGRSVRMYNT
WSDYYGQRVF GPPRNFGFNT YRQPRIGKTA FISIPDSLTN ATRARFILYS WSGRSSVSDS
RTTVAINAFS IWSDNSFGVF HDYNFDARVL TNPREFLNQG DNILRIWSNR NDHELEVLWP
GPALFVEYSS PPETPPLIAN DTSLTTQEDQ PLAVTLPVGN DARAVLQYTI VTPPMLGTLR
GLAPDLMYLP NRDVSGADRF VFRVDDQYGR SATATVSIDI QAVDDPPNIL LGEGALLNPG
DVFTRTGIVR DPDSPTLTAT VDYGDGSGAQ SLALNPDGSF QLSYRYRNGG RFPLTVSVND
GAQTSVATAT ITVLTPGTPP PGDWHLTGWR YRVPLEARSG AYPRVDYVAE FDVNFTAALS
QAGGNGAILR DSIRVVEVDA DGNLIDPMVV YQFDPVSAYN PITNARGTLL VLLRGRTEAN
VTRRFFVYFE TQGRFAPPDF TPLTAVVTPT TTYRRDLATV IETRNSTGQR SAMFYYSLNG
GALISMFDRS DADWISYNPA ADSAGAYRGI PNLGPVFHPG YYNVFPIPSA SGPLQGNELS
TNQRSTTTVE QEGVLRTVVR SVSSNRQWEA VWEFFPNSVR MSVVRTPLSG STPLSYWWLY
EGTPGGTLNE GDRWVRGDGL SGNAVDPSFA YNERFHADIN GPEWVYFRAG ESALGGRALW
LAHHDDADTT IEMYRQQNDS SGWQNSMTVF GFGRREWTGS AQTLQAELRG QRRFSLGFVD
SAPLNFDSAF GREIEGRYRN LEVIVGRGER LVPNLAPWAP GETYFTRPGR ALQVPAPGVR
ANDSDGDGDP FQITLTDEPL SGTLVFNSDG SFTYVPAEGF IGEDSFTYTA SDGILSAPPT
TVIIRVTANQ PPTAQSSNWT TTNRQSLSVP APGVLTGASD PDGDPLTAVL IGEPANGTLT
LNADGSFTYT PQPTFVGVDT FQIAAFDGED RSAPVGVRIT VRKENRPPTA QSSNWTTTNR
QSLSVPAPGV LTGASDPDGD PLTAVLIGEP ANGTLTLNAD GSFTYTPQPT FVGVDTFQIA
AFDGEDRSAP VGVHITVTAA PGSTPSYQVF LPLVQR
|
|---|
| |