| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3164 |
|---|
| Symbol | |
|---|
| ID | 5540662 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 4106948 |
|---|
| End bp | 4108309 |
|---|
| Gene Length | 1362 bp |
|---|
| Protein Length | 453 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640895285 |
|---|
| Product | major facilitator superfamily permease |
|---|
| Protein accession | YP_001433236 |
|---|
| Protein GI | 156743107 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2270] Permeases of the major facilitator superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.263181 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCATCG AGATGGCCCG CAGCACCGGC GTCGCTGCCA TCGATGATCG CCGGGAACAG
GTTGGCTGGT ATTTCTACGA TTGGGCAAAT TCCGCCTTTT CTACCACTGT TGTGACCGTT
TTCCTCGGTC CGTACCTGAC CGCAGTGACC CGACGCGCCG CCGACGCCGA TGGGTTTGTC
TACCCGCTGG GTATTCCGGT CGCCGCCGGC GCATTCTTTC CCTACATGGT TTCTCTTTCA
GTCCTGCTCC AGGTGCTTTT TCTACCGATC CTCGGCGCAA TTGCGGACTA TACCCATCTG
AAGAAGCATC TCTTGGGCGT GTTCGCCTAT GTGGGCGCCA TTGCGACAAT GCTGCTCTAT
TTTCTCGATG GCGGCAATTA CCTTTTCGGC GGGATGCTCT TTCTCATCGC CAACCTGAGT
TTTGGCGCGT CAATCGTGTT CTACAACGCT TTCCTGCCGG AAATTGCCAG CCCCGACCGG
CGCGATGCCG TATCGTCGCA GGGATGGGCG CTCGGCTACC TTGGCGGTGG CTTGCTGCTC
GTCGCCAATC TACTGCTCTT TCAAAACGCT GAGTCGTTCG GCGTTTCTTC CGATCACGCG
GTACGCATCA GTATCACATC GGCCGGCATG TGGTGGGCAA TCTTTACCAT CATTCCGCTG
CTGGCGCTGC GTCGGCGCGA TCCGATCAAA CGGATTCCGC CAGGCGAGCA TTATGTTACG
ATTGGGTTCA AGCAGTTGTG GGACACACTG CGCAAGGCGC GCCATTATCC GCAGACGCTG
CTGTCCCTCG GCGCCTATCT GCTTTACAAT GATGGCATTC AGACGGTGAT TGCCCTGGCG
TCGCAGTTTG GCGCCGAAGA ATTACGATTG GAACAATCCA CGCTGATTTC CGCCATCCTG
ATGGTGCAGT TTGTCGCCTT CATTGGCGCC CTCGCCTTTG GACGCATCGC CGGGTGGCTT
GGCGCCACTC GCGCCATCCT GGTGAGCCTG GTAATCTGGA CGAGTGTGAT CGTTGCGGCG
TATGGCTGGG TGCAACCAGA CAGCCCGACA CAGTTCTACA TCCTGGCGGC TGCGATTGCA
ATTGTGCTGG GCGGCAGTCA GGCAATCAGT CGATCACTCT TTTCGCAGAT GATCCCGCCA
GGGCAGGAGT CGGAGTATTT CAGTCTGTAC GAAGTCAGCG AACGTGGCAC CAGCTGGCTT
GGACCGCTCG TTTTTGGATT GGCGCTCCAG TTCACCGGCA GCTACCGCGT GGCGATCCTG
CTGCTGCTCA TCTTCTTCAT CGCCGGTATT GCGCTGCTGC TACGCGTTGA TGCACGCCGC
GCCATTCTCG AAGCCGGCAA CGTACCGCCC GCCAAAGTTT GA
|
|---|
| Protein sequence | MSIEMARSTG VAAIDDRREQ VGWYFYDWAN SAFSTTVVTV FLGPYLTAVT RRAADADGFV
YPLGIPVAAG AFFPYMVSLS VLLQVLFLPI LGAIADYTHL KKHLLGVFAY VGAIATMLLY
FLDGGNYLFG GMLFLIANLS FGASIVFYNA FLPEIASPDR RDAVSSQGWA LGYLGGGLLL
VANLLLFQNA ESFGVSSDHA VRISITSAGM WWAIFTIIPL LALRRRDPIK RIPPGEHYVT
IGFKQLWDTL RKARHYPQTL LSLGAYLLYN DGIQTVIALA SQFGAEELRL EQSTLISAIL
MVQFVAFIGA LAFGRIAGWL GATRAILVSL VIWTSVIVAA YGWVQPDSPT QFYILAAAIA
IVLGGSQAIS RSLFSQMIPP GQESEYFSLY EVSERGTSWL GPLVFGLALQ FTGSYRVAIL
LLLIFFIAGI ALLLRVDARR AILEAGNVPP AKV
|
|---|
| |