| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3158 |
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| Symbol | |
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| ID | 5540656 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 4098956 |
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| End bp | 4100293 |
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| Gene Length | 1338 bp |
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| Protein Length | 445 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640895279 |
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| Product | anti-sigma-factor antagonist |
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| Protein accession | YP_001433230 |
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| Protein GI | 156743101 |
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| COG category | [G] Carbohydrate transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG1366] Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor)
[COG1879] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00377] anti-anti-sigma factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACATCTG CCATTACACT TGGTTGTGTT CTCAACGACG CTCGTTTTAC CTTCTGGTCG
ATTCTGCGCC ACGGTGTACG CGCGCGCGCA GCGGACCACG GTGTGACCGT CATTGATCAG
GACGCGCGAA CGGTTGAAGC ACAGGTCGAG ATGGTTGCCG ATCTCCTGCG GCGACGGGTG
CATGCGCTGA TCCTGGGACC GGCGCGCGAG ACGCGCGCGT TTGCCCAGCA TCTTGAACTG
GCGCGGTTGG CGCGCGTGCC GGTTATCGAG GTCGATGGCG GGATCCTTGA GGGGTATGTC
AGTGCAACGG TTCGCTCCGA CGAGCGTCAG GGACTGATGC GCATTGCCGA GTTGCTCACG
GCGCGCCTGG GTGAACAGTT GTGCATCGCC CTTATCGCCG GTCCGCACAA CCATCGCGCC
GATATTCTGG CGGATGCGCT GCGCCAATGG CCGCGTATTC GGATAATGGC GCAGGCAGTC
GGCGACTGGA CGCGCGAAAG CGGCAGGAAT CTGACAGAAG AATGGCTGCG CGCCGGTCAA
CCGATCGATG CCATCTTTGC CGCCAATGAT CCCATGGCGC TTGGCGCGGT TGATGCGCTC
AAGGCGCAGA ACCTGGCGGG GAAGGTCGTT GTCGTCGGTT TCGATGGCTT GCCGGAAGCG
CTGCGCGCCA TTCACAGCGG CCACATGCTG GCAACGGTCA ATCAGGAGCC GCTGCGTATC
GGACGTCAGG CGGTGGATGT GGCGCTCCAG GCACTGCGCG GCGTTCCGGT CGAACGGCAG
ATTTTCACAC CCGGCGAGTT GATCACGTGC GACAATGTGA CCGAATCGGC GCTGAGCGCG
CTTGATCTGC TTCCCGGTAT CATGCACGAT CTCATCGAAA GTAATGCCGA ACGACAGAAG
TTGCAGGACG AAATTATTGC TGCGCAGCGC TCGACCATTC GGGAATTATC AACGCCGATC
ATTCCACTCG ATGCGCGCAC GCTTATTGTT CCCCTGATCG GCGCGATTGA CAGCACCCGC
GCTGCGCAGA TGACCCACGC GATCCTTGAA GCGATTGAAG AGCGGCGCGC CGATGATGTT
ATCATCGACA TTACCGGGAT TGCAGTCATT GATACCGGCG TTGCCAATCA CCTGGTGCAG
ACGGCACAGG CAGCCGCTCT GCTCGGCGCG CATGTCACCC TGGCAGGAAT GTCGCCGGAA
GTTGCGCAGA CGATTGTGCA GTTGGGGGTC AAACTCGGTC AGTTGACCAC ATGCAGTAAC
TTGCAGACGG CGCTCGAACT CGTGCGTCGC CGCCATCACC GATGGCGGCG ACGCATGTTC
ACGGGAATGA TCGCGTGA
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| Protein sequence | MTSAITLGCV LNDARFTFWS ILRHGVRARA ADHGVTVIDQ DARTVEAQVE MVADLLRRRV
HALILGPARE TRAFAQHLEL ARLARVPVIE VDGGILEGYV SATVRSDERQ GLMRIAELLT
ARLGEQLCIA LIAGPHNHRA DILADALRQW PRIRIMAQAV GDWTRESGRN LTEEWLRAGQ
PIDAIFAAND PMALGAVDAL KAQNLAGKVV VVGFDGLPEA LRAIHSGHML ATVNQEPLRI
GRQAVDVALQ ALRGVPVERQ IFTPGELITC DNVTESALSA LDLLPGIMHD LIESNAERQK
LQDEIIAAQR STIRELSTPI IPLDARTLIV PLIGAIDSTR AAQMTHAILE AIEERRADDV
IIDITGIAVI DTGVANHLVQ TAQAAALLGA HVTLAGMSPE VAQTIVQLGV KLGQLTTCSN
LQTALELVRR RHHRWRRRMF TGMIA
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