| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3153 |
|---|
| Symbol | |
|---|
| ID | 5540651 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 4091527 |
|---|
| End bp | 4094799 |
|---|
| Gene Length | 3273 bp |
|---|
| Protein Length | 1090 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640895274 |
|---|
| Product | peptidase S41 |
|---|
| Protein accession | YP_001433225 |
|---|
| Protein GI | 156743096 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[S] Function unknown |
|---|
| COG ID | [COG0793] Periplasmic protease
[COG4946] Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGACG ATCGGTATGT TATCCGTCCC TACTTTCGCG CGCCCTCGAT TGATCCCGCC
GGCAGTCGTA TCGCATTCGT CTATGCAGGC GACATCTGGC TTGTTGATGT CAGCGGCGGG
CAAGCCGAGC GACTGACCGC TCATCCTGCA AATCACATGC TGCCGCGCTG GTCGCCGGAT
GGTTCAGCCA TCGCCTACAC CTCATCTCGC ACCGGACAGG GCGACGTGTA TGTGCTGCCG
CTCAACGGCG GCGAGGTGCG ACGGATCACA TATCACGAGG CGCAGAGCGC CGTCGAGTGC
TGGTCGCCTG ACGGCGCTGC CATCTATTTC ACCTCTCAAC GCGAGCGCCA GGGCGCCGCG
ATCTATCGCA TCGCCGCATC AGGCGGTACG CCGGTTCGCT GGATTGCACA ACCATACGAG
CGCCTCGGCA CAGTCGCGGT TTCACCCTGT GGTCGCTGGC TGGCATTCAG CCTGATGCGC
GATCTGTGGT GGCGACGGGG ACCGAATCCG TATGGCGGCG CAGAACTCTG GCTGGTATCG
AATGCGCCTG ACGCCGATGA TTTCTTTCAA TTGAGCGACG CGCCCGGTAT GAATTACTGT
CCCATGTGGT CGCCCGATAG TCAGTTGATC TTCTTTGTTT CTGATCGCGA TGGAAGCGAA
AATCTGTGGG TGGCGCCGCG AGAGGGAGGC GTCGCAGAGC GCATCACGGC ATTCACCGAC
GGGCGCCTGC TCTGGCCCTC GATCAGCGCC GATGGCAGAA TGATCGCATT CGAGCGTGAT
TTTGGCATCT GGACGCTCGA TCTCGCTTCC GGTGCAACCA CGCGCGTCCC GATTCAGGTG
CGCCAGGATA CCAAAGTGAC GCCGGTGCGG GTGCAGACCT ACACGCGCGA TGCAGGTGAA
CTGGCGCTCT CGCCCGATGG AAAGAAAGTC GCCTTTACGG TGCGCGGGAA GATTTTCGCC
GATTTTGCCG AAAAGGAAAC GGAACGCGAT CAGCGCCACG GGCCGGCCTA TCGCATCTCG
CACACGGCAT TCCGCGATAG CGATATTGCC TGGTCGCCCG ACAGCCGGCG CCTGGTCTAT
GTTTCTGATC GTCACGGCGA CGAAGAAGTG TACTGCTACG ATTTCCTCGC GCGCAGCGAA
ACCCGCCTGA CGTTTGGAGC GAAACGTAAG AGCGCGCCTT GTTTCTCGCC TGATGGGCGC
TGGATTGCAT ATGCAAGCGG TGATGACGAA ATCCGGCTGA TCGAGGTCTC AAGCGGAGAG
GATCGCCCAT TTATTCGGGC ATACTTTGTC TTTGGCGCAT CGTTCGCCTG GTCTCCCGAT
AGTCGCTGGC TGGCATTCTG CGCTCAGGAC GAACGGTTTT TCAGCAATGT GTACGTGCAA
CATATCGAGG AAGAACAGGC GCATCAGATT TCGTTCCTCA GCAATCTCCA GGCGGCAGGA
CCGCTGTGGT CGCCTGATGG ACGCTTTCTT GTCTTCACGA CCGGACAGTA TCGCGCCGAG
TCGCAGATCG CGCGCATCGA TCTGCAACCT CAACCACCGG TGTTCCGTGA GACGGAGTTC
GAGCGGTTGT TTGAATTGCA CAAAAGTGAT TGTCGGGACA AACAGACGGC TGGACCGCCA
TCCACAGTCG GACCGCCCCA TACGCGCAGT GCAGACGCCG ATCGTGAGCC ACAACCGATG
GTTGTTCCTG TCATCGAACC GGATGATGAG TCCGACCGCG CTGCTCGTCA GCATAACGCG
CCATCCAGGT TATCCAGATC CACGTCACCG AGCGAGATAA CAATTGTGTT CAACGGTATC
GAACGCCGGT TGCGCCTGTT GACGCCACCG CAAATGGATG CCATTGCATT GTGTATCAGC
CCGGACGGAC GCGATCTCGT GTGCAGCGCC ACCATTGCGG GGCGGCAGAA TCTCTGGACA
TTGCCGCTTG ATGAGCCGCG CGCCGGTCAG GGACCGCGCC AGTTGACCAG CACTCCGGGC
ACGAAATCGT GTGCCTGCTT CACACCTGAT GGGAAACAGA TCTATTTCCT TGATGGTGGA
ACCATCGCGC TGCGAAAGTT TCCGAAGGGA GAACAGACGA CGTTGCCCGT ATCGGCTGAG
GTGGTTGTCG ATTTCACACA GGAAAAGCGG CAGATATTCG AAGAGTGCTG GCGGTTGCTG
CGCGATTGCT TTTACGATGA GCGCTTTCGC GGCATCGACT GGAAAACGAT ACACGACCGG
TATGCGCCAC TGATCCAGGG GGCGCAGACC CCTCCTGAAG TGTATCTCTT GATCAACCTG
ATGGTCGGAG AACTCCGTTC TTCACACGTT GGATTGTTCA GAAGCGACGG GAATGGCGGT
CAGGACGGCT ACCTCGGCAT CACGCTCGAT ACCATCGAAT ATCTGCGCAG CGGTCAATTC
CGCGTTGCCG GGGTTATTCC CGACGGCCCG GCGGCAGTCG CCCACAATGG TGCGCTTCAA
CCCGGTGATG TGTTGCTGGC AGTCAATGGC GTCGCATTGA AACCGGAAAC ATCGCTCGAT
GCGTTGTTGC AACGCACGGC GGGCCAGCGG GTTATTCTGC GTGTGGTCAA TCCTGCCGGC
GAGCAGCGCG ATGTCGAGGT GCGCCCCATC ACGGCGGAAC AGTATGACTG GTTGCGATAC
CGGGCATGGG TGCTTGAAAA TGAACAGATC GTTCATCGGG CGAGTAACGG GCGCATCGGC
TATGTGCACA TTCGTAAGAT GAGTTACGAT GCATACCAGC AGTTCCTGAC CGATCTCGAT
GTCGAAATGC ATAACAAAGA AGGCTTGGTC GTCGACATCC GCTTTAACTC AGGCGGGCAT
ACGGCAACGT TTATTCTCGA TGTTCTGATG CGTCGCAGCG TTCTGTTCAG CGCCTTTCGC
AATCGCTCTG TCGCCGATTC GTCGCATATC TTTGGCAATC GTGTGCTGAA CAAGCCGACG
GTGCTGGTGA CGAACGAGGC ATCGAGTTCT AATGCAGAAA CCTTCAGCGA ATCGTACCGT
CGCCAGGGTC TGGGGAAGGT GGTCGGAAAA CCAACGGCTG GCGCGGTTAT CGGCACGTTC
ACTCGACTCC TGATTGATGG GACATCGCTC CGGTTGCCGC AACTGCGGGT CACGACACCT
GAAGGCGAAG AGCTGGAAGG GCGCGGTCGA CCGGTAGACG TCGATGTGCC GCTGCGACTG
GGGGAGTGGC GCTATGGGCG TGATGCTCAA CTCGAGGCGG CAGTGCGCGT GTTGCTCGCC
GATCTCGATG GGCCGGACCA TCATATCGAA TAG
|
|---|
| Protein sequence | MTDDRYVIRP YFRAPSIDPA GSRIAFVYAG DIWLVDVSGG QAERLTAHPA NHMLPRWSPD
GSAIAYTSSR TGQGDVYVLP LNGGEVRRIT YHEAQSAVEC WSPDGAAIYF TSQRERQGAA
IYRIAASGGT PVRWIAQPYE RLGTVAVSPC GRWLAFSLMR DLWWRRGPNP YGGAELWLVS
NAPDADDFFQ LSDAPGMNYC PMWSPDSQLI FFVSDRDGSE NLWVAPREGG VAERITAFTD
GRLLWPSISA DGRMIAFERD FGIWTLDLAS GATTRVPIQV RQDTKVTPVR VQTYTRDAGE
LALSPDGKKV AFTVRGKIFA DFAEKETERD QRHGPAYRIS HTAFRDSDIA WSPDSRRLVY
VSDRHGDEEV YCYDFLARSE TRLTFGAKRK SAPCFSPDGR WIAYASGDDE IRLIEVSSGE
DRPFIRAYFV FGASFAWSPD SRWLAFCAQD ERFFSNVYVQ HIEEEQAHQI SFLSNLQAAG
PLWSPDGRFL VFTTGQYRAE SQIARIDLQP QPPVFRETEF ERLFELHKSD CRDKQTAGPP
STVGPPHTRS ADADREPQPM VVPVIEPDDE SDRAARQHNA PSRLSRSTSP SEITIVFNGI
ERRLRLLTPP QMDAIALCIS PDGRDLVCSA TIAGRQNLWT LPLDEPRAGQ GPRQLTSTPG
TKSCACFTPD GKQIYFLDGG TIALRKFPKG EQTTLPVSAE VVVDFTQEKR QIFEECWRLL
RDCFYDERFR GIDWKTIHDR YAPLIQGAQT PPEVYLLINL MVGELRSSHV GLFRSDGNGG
QDGYLGITLD TIEYLRSGQF RVAGVIPDGP AAVAHNGALQ PGDVLLAVNG VALKPETSLD
ALLQRTAGQR VILRVVNPAG EQRDVEVRPI TAEQYDWLRY RAWVLENEQI VHRASNGRIG
YVHIRKMSYD AYQQFLTDLD VEMHNKEGLV VDIRFNSGGH TATFILDVLM RRSVLFSAFR
NRSVADSSHI FGNRVLNKPT VLVTNEASSS NAETFSESYR RQGLGKVVGK PTAGAVIGTF
TRLLIDGTSL RLPQLRVTTP EGEELEGRGR PVDVDVPLRL GEWRYGRDAQ LEAAVRVLLA
DLDGPDHHIE
|
|---|
| |