| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3130 |
|---|
| Symbol | |
|---|
| ID | 5540626 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 4056134 |
|---|
| End bp | 4056667 |
|---|
| Gene Length | 534 bp |
|---|
| Protein Length | 177 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640895249 |
|---|
| Product | phage shock protein C, PspC |
|---|
| Protein accession | YP_001433202 |
|---|
| Protein GI | 156743073 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG1983] Putative stress-responsive transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGTCTC GTCTGGTGCG AAGTCGTCGT GATGCGGTCC TTGCCGGCGT GTGCGGCGGC
CTTGGCGACT ATTTTCAGAT CGATCCGGTG ATTGTTCGCC TGATCTTTGT CCTGGTTACT
CTGACCAGTG GCATCGGTTT TTTGCTCTAT CCCATCCTGT GGATCATTAT GCCGAAGGCG
CCGCCTGATA CACCGTCTGC TTTTCCAGGT GAAGGGCAAC AGGCGGGCGA GCAGGGCGCG
GTATTCAGCC GTCAGGCATA CCAGGCTCAG TATTCCCGGC AATCCGGGTA TGCCGAGTCG
TCGTTCGCCG ATGCGGCATC CGGTCCGCCA CAGACGGGAC AGACGATCAA TTTGCGGATG
GATCCGGCAA TGCCGCCAGC GCGTGCGCCT CGTCGTCGTC TGAATTGGGC CGGTATCGTG
CTGATCGGGC TAGGGCTGAT CTTTCTGGCT GAGCAGTTCG GCATCGATAC CGATATCGTC
TTTCCTCTGC TGATGATCGT TGCCGGAGGG ATGCTCATCT TTCGCCATCG CTAG
|
|---|
| Protein sequence | MQSRLVRSRR DAVLAGVCGG LGDYFQIDPV IVRLIFVLVT LTSGIGFLLY PILWIIMPKA
PPDTPSAFPG EGQQAGEQGA VFSRQAYQAQ YSRQSGYAES SFADAASGPP QTGQTINLRM
DPAMPPARAP RRRLNWAGIV LIGLGLIFLA EQFGIDTDIV FPLLMIVAGG MLIFRHR
|
|---|
| |