Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_3086 |
Symbol | |
ID | 5540582 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 3998794 |
End bp | 4000791 |
Gene Length | 1998 bp |
Protein Length | 665 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640895205 |
Product | polymorphic outer membrane protein |
Protein accession | YP_001433158 |
Protein GI | 156743029 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 42 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACACCT CACGACCACC CAGTCGCTGG CGTCGTCTGC TGGCGCATAT CTGCCTGACC ATCCTGTGTG TCAGCGCGAC AGTTCCGCCA CTGCCCGGTA TGGCATCGGC GCCTGCCGGC GCTCCTGGCG CGCCTCCCGC TGCCTGCACC CCTCCGATTG TGCCGGTGAC GCTGGTCAAT CCGACGGTCA TCACCAGTTG CACGCAGGCG AACCTTCAGG CGGCGCTTGC GACCGGCGGG CATATCACCT TCGACTGCGG ACCCCACCCG GTCACGATTC CGATCACTTC GCCACTGGTC ACCTCAGCGA CCCGCGATAT TGTGCTGGAT GGTAAAGGAC TGATCACGCT CGATGGCGGC GGTGTCACCC GTATTCTCGA AAAACCGTTT ACCCCGGGTT CGCACATTGA TAAGACCTCC GGCAACGATC TGGTCATCCA GAATATGCGC TTTATCAATG GGCGCGCGCC GGCCGCCACG AAAACGCAGG ACGACAAAGC GCGCGGTGGG GCGCTGTGGG TGACGAGTCC GGGAACACGC CTCCATATCA TCAACTCGAT CTTCGAGAAC AACCGCACGA CCAGCATGAC CGACGAGGAC AATCAAGGCG GTGCGATCTA TGCCGGCAAT ATCTACGAAA CGGTCATCGT CGGGTCGGTC TTTGTCAACA ATGAGGCCGG CAGCGGCGGC GCATTCGGCG GAATTGCGAC CGGCTTGCAG GTCTACAACT CGCGGTTCAC GAACAACCGC GCCGCTGACG CGACGACGGG CGGCATTGTG CGAGGGCATG GCGGCGCCAT TCATCTCGAT GGCGTCAGCA ATAGCTTCAA TCCGATCACC GGTAACACTG TCGAGGTCTG CGGCAGCGTG TTCGATGGAA ACACTGCAAC GCGCGGCGGC GGCGCACTCA AAGTGACGAT CTCCGATAAC CTGAACACGA AAGCGACCTA TGCCCGCTCG ACCTTTAGCA ACAACCGGGT GCTCGACTCA CCGCCCGCTG AAGGTCACGG CGGCGCTATT TATCATATCG AAGACGACCT GGCAGGTGGG GTGAATGAGG ACAATATCGA GATCCGCGAG TCGACGTTCA ACGGCAACTA TGCCGCAAGG CAAGGAGGTG GCGTCTGGAT GTCGGTGAAC GGTCGCGGAC GGGTGGTGAA CTCAACGTTC TTCGACAATC GCGCCGCAAC CGCCGGAACC AACGTCATCG GTCAGGGAGG CGGCATGATC ATCAGCAGAG GGACCATCGA CATTATTCAC GCGACGTTTG CGAGCAATTT CGCCACGTTT CAGGGTGGTG CGATCTTTGC CGGTAATCCG TCAGCAGCGG CAGTGACACT GACCAGTTCA ATCTTCTCTG CTAATCGCCT CGATCCAACG CACACGAACC CGGTCACAAC CGAGTTTCAG GGGTACCACA CGAACCGTGC ATTGCTCAAT GGCGGCGGTA ACATTCAGTT TCCACGCACC AAAGCGCCCG ATTTCAATAA CGACATCAAC AACCTGATAA CCTCACCGGC TTCGGCAATC CTCTTCCAGG ACCCACAACT CGCGCCGCTG GCAAACAATG GCGGTCCCAC ACCGACGATG GCAATTGCGG CGTCCAGTCC GGGGTTCAAC CGCGCTGCGG CGGCGACGTG CCCGGCAGCC GATCAGCGCG GCGTCATTCG TCCGCAGGGA GGCGCCTGTG ATGTGGGAGC GTATGAACTG GTGTTGGCGC TATCGCTCAC GCCGCCGTTT GTTGGCGTCG GCGAAGCAGG AACGGTTGTG ATCGTCTCCG GCGCCGGCTT CGACGCGAGC AGCACGATCG TCATCGGCGG CGTTGAACGT CCGACAACGT TTGTCAGCGC CACTGAACTG CGCACCACGC TCACTGCGGC TGATGTGGCG AACGCTGGCG ATCTGGAGGT GCGGGTCAGC AACTCGGCGC TGCCGCCGGT CACGCTGCGC GTCCTGGCGC AGGTCTATCG TGGCTATTTG CCGATCGTTC GTCGCTGA
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Protein sequence | MNTSRPPSRW RRLLAHICLT ILCVSATVPP LPGMASAPAG APGAPPAACT PPIVPVTLVN PTVITSCTQA NLQAALATGG HITFDCGPHP VTIPITSPLV TSATRDIVLD GKGLITLDGG GVTRILEKPF TPGSHIDKTS GNDLVIQNMR FINGRAPAAT KTQDDKARGG ALWVTSPGTR LHIINSIFEN NRTTSMTDED NQGGAIYAGN IYETVIVGSV FVNNEAGSGG AFGGIATGLQ VYNSRFTNNR AADATTGGIV RGHGGAIHLD GVSNSFNPIT GNTVEVCGSV FDGNTATRGG GALKVTISDN LNTKATYARS TFSNNRVLDS PPAEGHGGAI YHIEDDLAGG VNEDNIEIRE STFNGNYAAR QGGGVWMSVN GRGRVVNSTF FDNRAATAGT NVIGQGGGMI ISRGTIDIIH ATFASNFATF QGGAIFAGNP SAAAVTLTSS IFSANRLDPT HTNPVTTEFQ GYHTNRALLN GGGNIQFPRT KAPDFNNDIN NLITSPASAI LFQDPQLAPL ANNGGPTPTM AIAASSPGFN RAAAATCPAA DQRGVIRPQG GACDVGAYEL VLALSLTPPF VGVGEAGTVV IVSGAGFDAS STIVIGGVER PTTFVSATEL RTTLTAADVA NAGDLEVRVS NSALPPVTLR VLAQVYRGYL PIVRR
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