| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3080 |
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| Symbol | sdhA |
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| ID | 5540576 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 3987694 |
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| End bp | 3989664 |
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| Gene Length | 1971 bp |
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| Protein Length | 656 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640895199 |
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| Product | succinate dehydrogenase flavoprotein subunit |
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| Protein accession | YP_001433152 |
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| Protein GI | 156743023 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01811] succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCACCA CGGATACCAG GCCGATAACA ACCCGGCCCG CAACGGAATA CCTCGACCCG
AAACTTCAAT CGAAGATACC GGAAGGTCCC ATTGAGCGCA AGTGGGAACG GCACAAGTTC
GAGATGAAAC TTGTCAGCCC CACGAACCGC CGGCGCTACA CGATTATTGT CGTCGGTTCG
GGACTGGCGG GCGCCTCGGC AGCGGCAACT CTGGGGGAAG CGGGGTACAA CGTCAAGTGC
TACACCTACC ACGATAGCCC GCGCCGCGCG CACAGCATCG CTGCGCAGGG GGGCATCAAC
GCCGCCAAGA ACTATCGCAA CGACGGCGAT AGCGTCTTCC GATTGTTCTA CGATACGGTC
AAGGGCGGCG ACTTCCGCGC GCGTGAGGCG AATGTTTACC GCCTCGCAGA GGTCAGCATG
GCGATCATCG ATCAGTGCGT GGCGCAGGGG GTGCCGTTTG CGCGCGAGTA TTCCGGCTAT
CTGGACAACC GCTCGTTCGG CGGCGCACAG GTAGCGCGCA CCTTCTACGC CCGTGGACAG
ACCGGGCAGC AACTGCTGCT CGGCGCCTAT CAGGCGCTCA GCCGCCAGAT CGGGCTTGGG
CAGGTCAAGA TGTTTTCGCG CACCGAAATG CTCGACCTGG TCGTCGTCGA TGGTCGGGCA
CGCGGCATTG TGACACGTGA TATGGTCACC GGCAAGATTG AGTCGCACTT TGCCGATGCA
GTGGTGCTGG CAACCGGCGG CTACTCGAAT GTCTTCTATC TTTCAACGAA TGCGAAGGCA
TGCAATACGA CCGCCATCTG GCGCGCCCAT CGTCGCGGCG CCTTCTTCGG CAATCCATGC
TTTACCCAGA TCCATCCGAC CTGCATCCCT GTCAGCGGCG ACCATCAGAG CAAATTGACG
CTTATGTCGG AGTCGCTGCG CAATGATGGG CGCGTGTGGG TGCCAAAGAC GCCGGGCGAT
AAGCGTCCGC CCAGTTCCAT CCCGGAAGAT GAGCGCGACT ACTACCTGGA GCGCCGTTAT
CCCAGTTATG GCAACCTTGC GCCACGCGAC ATCGCATCGC GCGCGGCGAA GCAGGTGTGC
GACGAGGGGC GCGGCGTCGG TCCCGGCGGG CTGGGTGTCT ATCTCGATTT CTCCGATGCG
ATCAAGCGCC TGGGAAAGCG GGTGATCGAA GAACGCTATG GCAACCTCTT CGAGATGTAT
GAGCGCATCA CCGGCGAAAA TCCATATGAG ACCCCGATGC GCATTTACCC GGCGGTGCAT
TACACGATGG GCGGATTGTG GGTCGATTAC AATCTGATGA GCACCATCCC CGGTCTGTTC
GTCATTGGCG AAGCAAACTT CTCGGACCAC GGCGCAAACC GCCTGGGCGC ATCGGCGTTG
ATGCAGGGTC TGGCGGACGG CTACTTCATT CTGCCGTATA CCATCGCCGA TTATCTGGCA
TCGACTAAAC TGCCGAAGGT CGATACAAGC CATATTGCGT TCCGTGAAAC CGAGGCGGAA
GTCGCCGACC GTATCAAGCG CCTGCTCAAC ACGAATGGCA CACGCACCGT CGATATGTTC
CACCGCGAAC TCGGCAAGAT TATGTGGGAC TATTGCGGTA TGGCGCGGAA TGAAGCCGGT
CTGAAGCATG CGCTCGAACG CATCCCGGAG CTGCGCGAAC GGTTCTGGCG CGAAGTGAAG
GTGCCCGGCG AGGGAAATGA CATCAATCAG GAATTGGAGA AAGCCGGGCG CGTGGCCGAC
TTTATGGAAC TCGCCGAACT GATGTGCATC GATGCGCTCC ATCGGGACGA GTCGTGTGGC
GGTCATTTCC GTGAGGAGCA TCAGACCGAA GATGGCGAAG CCGAACGCGA TGATGAGAAC
TTCTCGTATG TGGCTGCCTG GGAGTTTACT GGACTGGGAA CCAAACCGGT GCTCCATAAG
GAACCGCTGA TTTTCGAGTA TGTCAAACCG GCCGTTCGCA GTTACAAGTA A
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| Protein sequence | MTTTDTRPIT TRPATEYLDP KLQSKIPEGP IERKWERHKF EMKLVSPTNR RRYTIIVVGS
GLAGASAAAT LGEAGYNVKC YTYHDSPRRA HSIAAQGGIN AAKNYRNDGD SVFRLFYDTV
KGGDFRAREA NVYRLAEVSM AIIDQCVAQG VPFAREYSGY LDNRSFGGAQ VARTFYARGQ
TGQQLLLGAY QALSRQIGLG QVKMFSRTEM LDLVVVDGRA RGIVTRDMVT GKIESHFADA
VVLATGGYSN VFYLSTNAKA CNTTAIWRAH RRGAFFGNPC FTQIHPTCIP VSGDHQSKLT
LMSESLRNDG RVWVPKTPGD KRPPSSIPED ERDYYLERRY PSYGNLAPRD IASRAAKQVC
DEGRGVGPGG LGVYLDFSDA IKRLGKRVIE ERYGNLFEMY ERITGENPYE TPMRIYPAVH
YTMGGLWVDY NLMSTIPGLF VIGEANFSDH GANRLGASAL MQGLADGYFI LPYTIADYLA
STKLPKVDTS HIAFRETEAE VADRIKRLLN TNGTRTVDMF HRELGKIMWD YCGMARNEAG
LKHALERIPE LRERFWREVK VPGEGNDINQ ELEKAGRVAD FMELAELMCI DALHRDESCG
GHFREEHQTE DGEAERDDEN FSYVAAWEFT GLGTKPVLHK EPLIFEYVKP AVRSYK
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