Gene Rcas_3059 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_3059 
Symbol 
ID5540555 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp3961879 
End bp3962865 
Gene Length987 bp 
Protein Length328 aa 
Translation table11 
GC content60% 
IMG OID640895178 
ProductABC transporter related 
Protein accessionYP_001433131 
Protein GI156743002 
COG category[V] Defense mechanisms 
COG ID[COG1131] ABC-type multidrug transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.588956 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGCCC TTGTCGAAAC ACATGACCTG ACGCGCCGGT ATGGATCGAA CCTGGCGCTG 
GATCATCTGA ACCTCACCAT TCCCGAAGGC GCCATCTTCG GCTTTATCGG ACCAAACGGC
GCCGGCAAGA CGACGACCAT GCGCATCCTG ACAACGCTGC TGGCGCCAAC GTCGGGGGAG
GCGCGCGTCG CTGGCATATC CGTCACCCGC GAGCCACGCG CCGTGCGGCG GCTTGTTGGC
TTTATGCCCG ATTTCTTCGG CGTCTACGAT AATATGAAGT CGTGGGAATA CCTCGACTTT
TTCGGTCGCG CATACAGCAT ACCGGCGCAA CGGCGCCAGC AATTGATCGG TGAACTGCTG
GCACTGGTCG ATCTGGAGCA CAAGCGCGAT GAGCCGGTGA TGTCGCTATC ACGCGGCATG
AAACAGCGGT TGAGTCTGGC GCGTTCCATG ATGCACGACC CCCGCCTGCT CATTCTGGAC
GAACCGGCAA GTGGTCTCGA CCCGCGGGCG CGCATCGAAC TGCGCGAATT ACTGAAGGAA
CTGCGGGCGA TGGGGAAAAC GATCATGATC AGTTCGCACA TTCTGAGCGA ACTTGCAGAA
ATGTGCACCC ACATCGGCAT TATCGAGCGG GGCAAACTGC TTGCGGCAGG CGAAGTGCAG
GAGATTCTGC GCACCATGCG TCCCCATCGC ATTGTTGAAA TTCGTGTCGT ATCCGGCGCT
GCGCGCGCCG AAGAGCTGCT GCGCACACAC GCTGATGTGC TGGAGTTGCG TCGTGAAGGA
GCACGCGCCG AGTCCGACGA CGAGAACGCG CCGCTCGACG ACGAGACAGG ACCGCACACG
CTCCTGGCTG ATTTTGCTGG CGATGAGCAC GCACTGGGTG AATTACTGGC AATGCTGATC
GCAGCGGGGG TGCGAATCTC CCATTTTGCC GAACAATCCG GCGACCTCGA AGATATTTTT
CTGCACGTCA CAAAAGGCGT CGTCTGA
 
Protein sequence
MTALVETHDL TRRYGSNLAL DHLNLTIPEG AIFGFIGPNG AGKTTTMRIL TTLLAPTSGE 
ARVAGISVTR EPRAVRRLVG FMPDFFGVYD NMKSWEYLDF FGRAYSIPAQ RRQQLIGELL
ALVDLEHKRD EPVMSLSRGM KQRLSLARSM MHDPRLLILD EPASGLDPRA RIELRELLKE
LRAMGKTIMI SSHILSELAE MCTHIGIIER GKLLAAGEVQ EILRTMRPHR IVEIRVVSGA
ARAEELLRTH ADVLELRREG ARAESDDENA PLDDETGPHT LLADFAGDEH ALGELLAMLI
AAGVRISHFA EQSGDLEDIF LHVTKGVV