Gene Rcas_3047 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_3047 
Symbol 
ID5540543 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp3950360 
End bp3951187 
Gene Length828 bp 
Protein Length275 aa 
Translation table11 
GC content67% 
IMG OID640895166 
ProductFHA domain-containing protein 
Protein accessionYP_001433119 
Protein GI156742990 
COG category[T] Signal transduction mechanisms 
COG ID[COG1716] FOG: FHA domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGTTCT GTCCCCAATG TGGCGTCGAT AATCCAGCGG GCGCGCGCTA TTGTGATCAG 
TGTGGCGCCA TGCTGATACC GGTTCCCGCT CAGGCAGCGC CGCCGCCTGT CGCTCCCTCA
GCCGCCATTC CCGCCATCGG TCCCACCGTC TGTCCGCAGT GCGGTCAGGC GGTCATCCCC
GGTGAAGCGT TCTGCGACAA TTGTGGCGCG CCATTGCGCG CGCCGGCGCG CCCGGTTGCT
CCGGTTCCAT CCCCGCCGCA AAGTGCCGCG CCGCCGCAGC CAGTGTATCC GCCGCCTGCG
CCGGTTACGG CGCCGTCGTC GTATCAGGCG TCTGTCGCGC CGCCGGCTGC ACCGCCTCCG
GCAACGCCGT CTGCGCCGCC GGTTCCATCG GTCGCACCGC CTTCGGCAAT GCCGTCTGCG
CCGCCGTCGT ATCAGGCGCC GCTGGCTCCC CCTGCTCCGG CGGTTCCGCC GATGACGCCT
GCGCCTGTCA GCGGGCGCAC CACGCTGGCG TCGTGTGCGC TGGTCGTGAT AGGGACCGGC
GCTGTCCTGC CGTTGCCTGC CGACTCCCAA GCGCTCGTCG GTCGCAGTGA TCCGGTGAGC
AAGTTCTATC CTGATGTTGA TCTTGGTCCG CACGGCGCGC TCGATCAGGG GGTCGGGCGG
CGGCACGCGC GGATTTTTGT TCAGGGCGGG CAGGTGATGA TCGAAGATCT CGATAGCGTC
AATGGCACCC TGGTGAATGG ACAACGAGTG CTCCCACACC AGTCGCGTGC GCTGTCCAAC
GGTGATCAGA TTACACTGGG GCGTATGCTC CTGCGCTTTC AGGCATAA
 
Protein sequence
MPFCPQCGVD NPAGARYCDQ CGAMLIPVPA QAAPPPVAPS AAIPAIGPTV CPQCGQAVIP 
GEAFCDNCGA PLRAPARPVA PVPSPPQSAA PPQPVYPPPA PVTAPSSYQA SVAPPAAPPP
ATPSAPPVPS VAPPSAMPSA PPSYQAPLAP PAPAVPPMTP APVSGRTTLA SCALVVIGTG
AVLPLPADSQ ALVGRSDPVS KFYPDVDLGP HGALDQGVGR RHARIFVQGG QVMIEDLDSV
NGTLVNGQRV LPHQSRALSN GDQITLGRML LRFQA