| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3043 |
|---|
| Symbol | |
|---|
| ID | 5540539 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 3943882 |
|---|
| End bp | 3946674 |
|---|
| Gene Length | 2793 bp |
|---|
| Protein Length | 930 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640895162 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001433115 |
|---|
| Protein GI | 156742986 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4485] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTGGAGGT ATCGTTCCAT CGTTGCTCTG CTCCCACCGT TGGCATATCT GCTGCTTGCG
GTTGTGTTCA CCTGGCCCCT GGCAGCCCAT GGGACAACGG CGCTCGGCAG CGGTCTCGAT
CCCATGCTGC AAACCTGGGT GCTCGCCTGG AATACGCATG CGATAACCAC CAATCCGCTG
ACGGTCTGGC ATGCGCCGAT CTTTTTTCCA TACCCGGATA CGCTGGCGTA CAGTGATCAT
CACCTGCTGC TGTCGCTCGT CGCCCTGCCA CTCATTATCG CTGGCGGTCC GGTGCTGGCG
TACAACCTGC TGACGCTGAC GAGTTATGCG CTGACCGGAT GGGCTGTCTA TCTGCTGGCG
CGCGAGATGT TCGCCAACGC ACCCAACAAA TGGATACGTG CAACCGGCGC GTTTGCAGCC
GGCGCCGTAT TTGCGTTCGG CACCTATCGG ATGACCCACT TTGTTCATCT GCAACTGTTG
CAGACCGCGT GGCTGCCACT GGCACTGCTG TTTCTTCGGC GACTGTTGCG CACTCCCGAT
GGCAACGGCG GGCGCTGGCG CGATGCGGCG CTCTTCGGAT TATTCGCAGG CATTCAATGC
GTGACGGCGC TTTACTATGC CTCCTTTACA GCGCTGGCGC TTGGGTTGTA CGTGGCGATC
TGGTTGCCGG AAGCGCTTCG TTCACCAGCG CGCGCCGATC TCTGGCGGAG GATTGGAGGT
CTGGCGCTTG GCGGAGGAGT GGCGGCGCTG ATTATCATAC CGCTCACTCT TCCATATGTG
CGCGTTTACG AGTATCTCGG AGTGGTGCGC TCTCTGCGCG AACTCGATAA CTGGTCAGCG
CCGCTCCAGG CGTATCTGGC AGTTCCGCCG ACAAACTGGC TGTACGGCAG TCGCGGCGGA
TGGTTTACCG CCAGCGGCGG CGAATTTGCG CTCTTTCCCG GCTTCACAAC GATTGGACTG
GCGACAGTGG GAGCGACTGG TGCGGTCTGG AGACGCCGTG GTGACCGCAG CGCCGCGCCG
GATGGTATTC CACCAGAACG AGACGTCATC TTTCTCGTTC TGCTCGCAAT TATCGCATTT
GTACTCTCAC TTGGAACGGG CATTCGCCTG GAGCGCGGCA GCGATCCACT GCCGATTCCG
CTGCCATATC CGTTGCTCTA TGAACGCATT CCCGGCTTTG GCGCGCTGCG CGTCCCGGCG
CGCTGGGCAA TGCTGACACA CCTGGCGCTG GCGCTGCTCG CCGGCATTGC CCTTGTCCGG
CTAGGGCGCT GGTTCGTACT CGTTCAGCAG CGCAGATGGG TGGCGCCTGC GGCACTGCTC
GTTATTGGAA GCGGGGCATT ACTCGAACAC GCAGCCATTC CTGTGCCGCT GGCAACTCCG
CCTTCTCCGC CGCCAATCTA CGCCTGGCTC GGAACACAAC CGGATATTCA TGCCATTCTG
GAGTTGCCGG TCGGTTCAAC GCCACGTGGC GCCGAACTTG AACGCATCAC CTTCCGCCAA
TTGTATCAGA TGCAGCACTG GAAACCGCTT GCGACCGGGT ACAGCGGAAT CATTCCATTC
GGGACAACCG ATCTGTTACG CCGGGTGCAG CGCCTGCCCG ACGATGACAC CCTGCGTTAT
CTGGCGCTGG CCGGCATTGA TACGCTGGTC ATCCACCGCA ACGAGTACGA TGCCGAGCAA
CTGGCACGAC TGCTGGCGTG GGCTGACGCG ACTCCGCTCC TGCGTCGGCG CGCTGAGATT
GGGGATGCAC TGGTCTACAC TATTTCGCCA GAAGCAGAGA TGCCATCACC GGTGATGACA
GGCGCTTCGG TGTTTGTATC GGCGGACGAG CGCGTTCCGG GGGTGCTGGC GCTCGGACTG
ATCCGGCGCT GGAAAGCGGG AGGGGCGAAT CTCTACGGCG CCGGGCGCAC GCGCTACTAT
CCTGAGCTAC AACCGCTGCA CGCCGGTCAG GTGTGTGATT ATGGGTTGCT GGCCGCCGAC
GAGGACCCGG TTGTTGTGGG GTTCAGCGCC GATGGGTTAC GCTGGCGCTC GAATGGTCTG
GCATTGTACG CCCGCGATCC ACACCTGATC GCAGCGCTCG ATCTGGCGCA ACCGGTCGTC
GGGCAGTTCC ACCCGGCATA CCCTTCGACA CTCACCGTCA TGCTCGAAGA ACGACGCATA
CGCATCGCCA ACATAGTCAT CCCGCTGGAT GCACCCTTAA CCGAAGCGCA CATTGAACTG
GACATCGCCA GTCTCTCAGA GCAAACGCTC GTCATCGGCG ACACGATCTA CGCGATTGCG
TCTGGCGCAG TGACGATTGC AGCGCCGGTA ACGCTCAACC AGCCAACACA GATCAATGGA
CCGGCAGAAG CCACAGTCAT TCAACGCATT CGCGTTCTCT CCGCACCGCG CGCGCCCGCG
CCGCCGCCGG AAGGCACGCT GGCGTTGAGC GCCGACAGTC GCTTCGACGG CTCACAGTTG
ACGGTCATTG CTCACATCGG CGGCGCGGGC GCGCTGGTCA TTGATGTGCA CGGCGCCGCT
GCGCGAGACG ACCGACCAAT CCATCTGCTC GAAGGCGTGT TGCCTGTTCC ACCGAATGGC
GATCCTCTGG TCTTCAGCGT CGATCTCTTA TCCCCAAATG AACCCTGGGT CATCCATCGT
GGAAAGGCAG AAGATGGCCG CTATGTTGCT TATGTCAAAT CGTCCACACG CACCGGCGCT
GCTGGAGTTC CCGTTGCAAC CTTCTTCATC CGCAACGGCG CCATCAGCGA CCCACGACCG
GCGCCGCTGC CGTTGCGAAT AGTCGGCGAG TAA
|
|---|
| Protein sequence | MWRYRSIVAL LPPLAYLLLA VVFTWPLAAH GTTALGSGLD PMLQTWVLAW NTHAITTNPL
TVWHAPIFFP YPDTLAYSDH HLLLSLVALP LIIAGGPVLA YNLLTLTSYA LTGWAVYLLA
REMFANAPNK WIRATGAFAA GAVFAFGTYR MTHFVHLQLL QTAWLPLALL FLRRLLRTPD
GNGGRWRDAA LFGLFAGIQC VTALYYASFT ALALGLYVAI WLPEALRSPA RADLWRRIGG
LALGGGVAAL IIIPLTLPYV RVYEYLGVVR SLRELDNWSA PLQAYLAVPP TNWLYGSRGG
WFTASGGEFA LFPGFTTIGL ATVGATGAVW RRRGDRSAAP DGIPPERDVI FLVLLAIIAF
VLSLGTGIRL ERGSDPLPIP LPYPLLYERI PGFGALRVPA RWAMLTHLAL ALLAGIALVR
LGRWFVLVQQ RRWVAPAALL VIGSGALLEH AAIPVPLATP PSPPPIYAWL GTQPDIHAIL
ELPVGSTPRG AELERITFRQ LYQMQHWKPL ATGYSGIIPF GTTDLLRRVQ RLPDDDTLRY
LALAGIDTLV IHRNEYDAEQ LARLLAWADA TPLLRRRAEI GDALVYTISP EAEMPSPVMT
GASVFVSADE RVPGVLALGL IRRWKAGGAN LYGAGRTRYY PELQPLHAGQ VCDYGLLAAD
EDPVVVGFSA DGLRWRSNGL ALYARDPHLI AALDLAQPVV GQFHPAYPST LTVMLEERRI
RIANIVIPLD APLTEAHIEL DIASLSEQTL VIGDTIYAIA SGAVTIAAPV TLNQPTQING
PAEATVIQRI RVLSAPRAPA PPPEGTLALS ADSRFDGSQL TVIAHIGGAG ALVIDVHGAA
ARDDRPIHLL EGVLPVPPNG DPLVFSVDLL SPNEPWVIHR GKAEDGRYVA YVKSSTRTGA
AGVPVATFFI RNGAISDPRP APLPLRIVGE
|
|---|
| |