| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2986 |
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| Symbol | |
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| ID | 5540478 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 3872571 |
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| End bp | 3873224 |
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| Gene Length | 654 bp |
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| Protein Length | 217 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640895104 |
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| Product | pyrimidine 5'-nucleotidase |
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| Protein accession | YP_001433061 |
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| Protein GI | 156742932 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
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| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01993] pyrimidine 5'-nucleotidase |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0234941 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.000703738 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGGCGCTCG CTGCAATCCT CTTCGACCTT GATGGTACGC TCTACCCTCG CTCCGCAGGC
GTTCAGCGCG CCCTTGACGA GCGCATGAAC GCATACGTGC AGCAGATCAC CGGCTGTGCC
CTCGACGAAG CGCCGGCACT GCGCCATTCC TGGTTTATCC GCTACGGGAC GACCCTCACC
GGATTACAGC GCGAATACCA TGTCGATGTC GAAGATTACC TGCGTGCCAT TCACAATATT
CGTCTGGACA CGTTTCTGGC GCGCGACCGT GAACTCGATG CGCTGCTCGA CCGGCTTGAT
CTTCGACGGG CGATTTTTAC CAACTCGCCT GCCGAACACG CAGCGCGCGT GCTACGCGCG
CTTGGCGTCG CGCAGCACTT TCCGCTCATC TTCGATATTC GCTTCTTCGA GTTTCAGCCG
AAACCGAACC GAATCGCCTA CACCCGCGCC CTCGACGCAC TCGGCGTCAC CGCCAGCGAA
ACGGTGCTGA TCGAAGATAC ACCACAGAAC CTGCCCCCGG CGCGTGAACT CGGCATGCGC
ACTATTCTGA TTGACGAACA GGGCACGCAT TCCCCTGATG GCATTGCCGA CCACGTCGTG
CCAGACATTC GTGCTGCGCT GCGTCTGGTG AATGGCGACG TTGGACGGAT CTGA
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| Protein sequence | MALAAILFDL DGTLYPRSAG VQRALDERMN AYVQQITGCA LDEAPALRHS WFIRYGTTLT
GLQREYHVDV EDYLRAIHNI RLDTFLARDR ELDALLDRLD LRRAIFTNSP AEHAARVLRA
LGVAQHFPLI FDIRFFEFQP KPNRIAYTRA LDALGVTASE TVLIEDTPQN LPPARELGMR
TILIDEQGTH SPDGIADHVV PDIRAALRLV NGDVGRI
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