Gene Rcas_2976 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_2976 
Symbol 
ID5540468 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp3860249 
End bp3860698 
Gene Length450 bp 
Protein Length149 aa 
Translation table11 
GC content50% 
IMG OID640895094 
ProductPilT domain-containing protein 
Protein accessionYP_001433051 
Protein GI156742922 
COG category[R] General function prediction only 
COG ID[COG5573] Predicted nucleic-acid-binding protein, contains PIN domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0690747 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000187437 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAATCTA TGAGCGCCGG TAGCGGGTCC TCCTCTCTGG TATTTATTGA CACAAATATC 
TGGCTGTATG CCTTCAGTCA GATTCAGGAC ATCCAGAAAG CGCATCGAGC CAGAGTGCTC
ATTCGTGGCA CGTCACAGAT TGTCTTGAGT ACGCAAGTCA TCAATGAAGT CGCCGTCAAC
CTGCTGCGCA AATTTCAAGC CGCTGAGTCG GATATCCGCA AGCGGATACG CTCGTTCTAT
CGCAAATATC TGATTATTGA GCATAGCCGC GCTATTCTTT TGCACGCTTC CGATCTCCGC
ACTGTGTACC GGGTTTCGTA CTGGGATAGT TTGATCCTGT CTAGCGCACT CGCGGCAGGG
GCGACTATCC TTTACCCCGA GGATATGCAG GAAGGGTTGA TGGTTGCCAA CCAACTCACG
ATTGTCAACC CTCTGAGAGA TTCATCGTAA
 
Protein sequence
MKSMSAGSGS SSLVFIDTNI WLYAFSQIQD IQKAHRARVL IRGTSQIVLS TQVINEVAVN 
LLRKFQAAES DIRKRIRSFY RKYLIIEHSR AILLHASDLR TVYRVSYWDS LILSSALAAG
ATILYPEDMQ EGLMVANQLT IVNPLRDSS