| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2972 |
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| Symbol | |
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| ID | 5540464 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 3856647 |
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| End bp | 3857693 |
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| Gene Length | 1047 bp |
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| Protein Length | 348 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640895092 |
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| Product | RpoD family RNA polymerase sigma factor |
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| Protein accession | YP_001433049 |
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| Protein GI | 156742920 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000649715 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0000217703 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCCGAA TGATGCAGCA GCATCCGTGG GATGAACTCG ATGAGCGCCA GGAGATCGTC
AATGAGGACG ACACGGCGCC TGTGACAGAT ATTGAGGAGA TGACAGCCGA GACACTGGAG
GAAACGCTGG AGCCGGATTC GACGCTCGAT TCGATCCAGC ACTACTTGCA GGAGATTGGC
CGCGTGCCGC TGTTGACAGC TGCGGAGGAG ATCGAACTCG CCGAGCGCAT GGAGCGCGGC
GCTGCCGCTG AACGTCGCCT GGCATCGGGG GAAGATCTCA GCCCGCAGTT GCGTCAGGCG
TTGCTCGCCG ATGTGGCCGC TGCTCAGGAG GCGCGCCGCC ATCTGATCCA GGCGAACCTG
CGCCTGGTGG TGAGCATTGC CAAGAAGTAT GTCGGGCGCG GACTCTCGTT GCTCGACCTC
ATCCAGGAAG GGAATATCGG ACTGATGCGC GCCGTCGAGA AGTTCGACTA CCACAAGGGG
AATCGTTTCT CGACGTATGC GACCTGGTGG ATCCGTCAGG CGGTGACCCG CGCAATTGCC
GAGCAGGGTC GCACTATTCG CCTGCCGGTG CATATGAGCG AATCGGTCGG GCAGGTTAAG
CGCACGGCGG ATCGCCTGGC GCAGGCGCTC GAGCGGCAGC CCACTCCTGA GGAGATCGCC
ACTGCACTTG GGCAGCCGAC CGAGCGGATT GAGCGCGTGC TCGAAGCGTC GCGCCGTCCG
GTGTCGCTCG AGACGCCGGT TGGCGAGGAC GGCGAGCATA CCCTAGGCGA TTTCTTGCAG
GACAGTGAAT TGCCCACACC GGTCGAAGCG GCGTCGCAGC AACTACTCCG GCGTGATCTG
GCGGCTGCGC TTGATCGCCT GAATGAGCGC GAACGCCGGA TCATTGATCT TCGCTATGGG
CTGGTGGACG GGCAGCGCCG CACACTCGAG GAGGTTGGGC GGGTGCTCGG AATGACCCGC
GAACGCGCGC GGCAGATCGA GGCGGAAGCG CTGCGGCGCC TGCGCGCGCC CGACGTTGGG
TTGCACCTGC GCGATTACCT TGAGTAG
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| Protein sequence | MSRMMQQHPW DELDERQEIV NEDDTAPVTD IEEMTAETLE ETLEPDSTLD SIQHYLQEIG
RVPLLTAAEE IELAERMERG AAAERRLASG EDLSPQLRQA LLADVAAAQE ARRHLIQANL
RLVVSIAKKY VGRGLSLLDL IQEGNIGLMR AVEKFDYHKG NRFSTYATWW IRQAVTRAIA
EQGRTIRLPV HMSESVGQVK RTADRLAQAL ERQPTPEEIA TALGQPTERI ERVLEASRRP
VSLETPVGED GEHTLGDFLQ DSELPTPVEA ASQQLLRRDL AAALDRLNER ERRIIDLRYG
LVDGQRRTLE EVGRVLGMTR ERARQIEAEA LRRLRAPDVG LHLRDYLE
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