| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2946 |
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| Symbol | |
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| ID | 5540436 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 3821430 |
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| End bp | 3823481 |
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| Gene Length | 2052 bp |
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| Protein Length | 683 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640895066 |
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| Product | Ig family protein |
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| Protein accession | YP_001433025 |
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| Protein GI | 156742896 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01451] conserved repeat domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0465755 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00278278 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGAGCGGCG CATTGCCTTC CGGCGTCACG TTTACGCCCA ACTCCAACGG CACGGCGACG
ATCAGCGGCA CGCCGACGGC AGGCGGGGTC TTCCCGCTCA CAATTACGGC CGCCAACGGC
GTGAACCCGA ACGCCACGCA AACCTTCACG CTGATCGTCA ATCAGGCGCC GGCCATCACC
AGCCCCAACA CCGCCACGTT CACCGTTGGG CAGGCGGGTT CGTTCACCGT CACCGCCACC
GGCTATCCGA CGCCGACGCT GAGTGTGAGC GGCGCATTGC CTTCCGGCGT CACGTTTACG
CCCAACTCCA ACGGCACGGC GACGATCAGC GGCACGCCGA CGGCAGGCGG GGTCTTCCCG
CTCACAATTA CGGCCGCCAA CGGCGTGAAC CCGAACGCCA CGCAAACCTT CACGCTGATC
GTCAATCAGG CGCCGGCCAT CACCAGCCCC AACACCGCCA CGTTCACCGT TGGGCAGGCG
GGTTCGTTCA CCGTCACCGC CACCGGCTAT CCGACGCCGA CGCTGAGTGT GAGCGGCGCA
TTGCCTTCCG GCGTCACGTT TACGCCCAAC TCCAACGGCA CGGCGACGAT CAGCGGCACG
CCGACGGCAG GCGGGGTCTT CCCGCTCACA ATTACGGCCG CCAACGGCGT GAACCCGAAC
GCCACGCAAA CCTTCACGCT GATCGTCAAT CAGGCGCCGG CCATCACCAG CCCCAACACC
GCCACGTTCA CCGTTGGGCA GGCGGGTTCG TTCACCGTCA CCGCCACCGG CTATCCGACG
CCGACGCTGA GTATGAGCGG CGCATTGCCT TCCGGCGTCA CGTTTACGCC CAACTCCAAC
GGCACGGCGA CGATCAGCGG CACGCCGACG GCAGGCGGGG TCTTCCCGCT CACAATTACG
GCCGCCAACG GCGTGAACCC GAACGCCACG CAAACCTTCA CGCTGATCGT CAATCAGGCG
CCGGCCATCA CCAGCCCCAA CACCACCACG TTCACCGTTG GGCAGGCGGG TTCGTTCACC
GTCACCGCCA CCGGCTATCC GACGCCGACG CTGAGTATGA GCGGCGCATT GCCTTCCGGC
GTCACGTTTA CGCCCAACTC CAACGGCACG GCGACGATCA GCGGCACGCC GACGGCAGGC
GGGGTCTTCC CGCTCACAAT TACGGCCGCC AACGGCGTGA ACCCGAACGC CACGCAAACC
TTCACGCTGA TCGTCAATCA GGCGCCGGCC ATCACCAGCC CCAACACCGC CACGTTCACC
GTTGGGCAGG CGGGTTCGTT CACCGTCACC GCCACCGGCT ATCCGACGCC GACGCTGAGT
GTGAGCGGCG CATTGCCTTC CGGCGTCACG TTTACGCCCA ACTCCAACGG CACGGCGACG
ATCAGCGGCA CGCCGACGGC AGGCGGGGTC TTCCCGCTCA CAATTACGGC CGCCAACGGC
GTGAACCCGA ACGCCACGCA AACCTTCACG CTGATCGTCA ATCAGGCGCC GGCCATCACC
AGCCCCAACA CCGCCACGTT CACCGTTGGG CAGGCGGGTT CGTTCACCGT CACCGCCACC
GGCTATCCGA CGCCGACGCT GAGTATGAGC GGCGCATTGC CTTCCGGCGT CACGTTTACG
CCCAACTCCA ACGGCACGGC GACGATCAGC GGCACGCCGA CGGCAGGCGG GGTCTTCCCG
CTCACAATTA CGGCCGCCAA CGGCGTGAAC CCGAACGCCA CGCAAACCTT CACGCTGATC
GTCAATCAGG CGCCGGCCAT CACCAGCCCC AACACCACCA CGTTCACCGT CGGGCAGGCG
GGTTCGTTCA CCGTCACCGC CACCGGCTAT CCGACGCCGA CGCTGAGCGT GAGCGGCGCA
TTGCCTTCCG GCGTCACGTT TACGCCCAAC TCCAACGGCA CGGCTACGAT CAGCGGGACG
GCGACGGCAG GCGGGGTCTT CACGCTCACA ATTACGGCCG CCAACGGCGT GAACCCGAAC
GCCACGCAAA CCTTCACGCT GAAGGTGGAG CAGAATCAGT TCCGGGTCTT CCTGCCGCTG
GTCGTTCGGT AA
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| Protein sequence | MSGALPSGVT FTPNSNGTAT ISGTPTAGGV FPLTITAANG VNPNATQTFT LIVNQAPAIT
SPNTATFTVG QAGSFTVTAT GYPTPTLSVS GALPSGVTFT PNSNGTATIS GTPTAGGVFP
LTITAANGVN PNATQTFTLI VNQAPAITSP NTATFTVGQA GSFTVTATGY PTPTLSVSGA
LPSGVTFTPN SNGTATISGT PTAGGVFPLT ITAANGVNPN ATQTFTLIVN QAPAITSPNT
ATFTVGQAGS FTVTATGYPT PTLSMSGALP SGVTFTPNSN GTATISGTPT AGGVFPLTIT
AANGVNPNAT QTFTLIVNQA PAITSPNTTT FTVGQAGSFT VTATGYPTPT LSMSGALPSG
VTFTPNSNGT ATISGTPTAG GVFPLTITAA NGVNPNATQT FTLIVNQAPA ITSPNTATFT
VGQAGSFTVT ATGYPTPTLS VSGALPSGVT FTPNSNGTAT ISGTPTAGGV FPLTITAANG
VNPNATQTFT LIVNQAPAIT SPNTATFTVG QAGSFTVTAT GYPTPTLSMS GALPSGVTFT
PNSNGTATIS GTPTAGGVFP LTITAANGVN PNATQTFTLI VNQAPAITSP NTTTFTVGQA
GSFTVTATGY PTPTLSVSGA LPSGVTFTPN SNGTATISGT ATAGGVFTLT ITAANGVNPN
ATQTFTLKVE QNQFRVFLPL VVR
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