| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2937 |
|---|
| Symbol | |
|---|
| ID | 5540427 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 3812771 |
|---|
| End bp | 3813583 |
|---|
| Gene Length | 813 bp |
|---|
| Protein Length | 270 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640895057 |
|---|
| Product | periplasmic binding protein |
|---|
| Protein accession | YP_001433016 |
|---|
| Protein GI | 156742887 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0614] ABC-type Fe3+-hydroxamate transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0000364974 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.00655173 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCTTGTGG TTGACGCGCT TGGTCGACGC CTGGAACTGA AGAGACCGCC GCAGCGCATT
GTGTCGCTCG TGCCGAGTCT GACTGAATGG CTCTTCGATG TCGGGCTCGG CGCGCGCGTT
GTAGCAGTGA CCGACTACTG CATCGAGCCG GCAGCGGCGC TTGCCGGCAT CCCGCGCATT
CGCGGCACGA AGAACCCCGA CCGGGCGAAG ATCATTGCCC TGCAACCCGA TCTGGTCATC
GCCGATCAGG AGGAGAACCG TGAACGCGAC GTGCAGGCGC TTACGGCGGC CGGCGTTCCA
GTCTATGTGA CGGCGATCCG CAGTGTTGCT GATGTGCTGG AGCAGTATGG ACGGCTCGCC
GCTGTGCTCG GAGCAGCGGA TGCGGCGGCG CCAGGGCTTA CGGCGCTGCG CGCGGCGCTC
GCCGAAGCAG CGCAACGGGC GCCGCAACGT CGTATCCCGA CGCTCGCCTT CATCTGGCGC
GATCCGTGGA TGGCGGTTGG GGCAGAAACG TATGCGGGCG ATCTGCTGGA ACGGTGTGGC
GCCGAAAATC TTGGTCGCCG GTTGCCGGGG CGCTACCCAC GCGCGTCGCT GGAGACATTT
ATGCGCCTGC AACCAGAGGT GATTCTGCTT CCGAATGAGC CGTATGCGTT CAGCGAACGT
GATCTGGTCG CTTTTGCGCC ATATGGCGAC GTTCCGGCGG TGCGGGATGG GCGCGTGCTG
CTGTGTGACG GCATGATGTT GACATGGCCC GGTTTGCGTG CCGTCCGCGC GTTGCGGGTG
TTTGCGGAGG CGATTGCAGG TGGGGAGAGA TGA
|
|---|
| Protein sequence | MLVVDALGRR LELKRPPQRI VSLVPSLTEW LFDVGLGARV VAVTDYCIEP AAALAGIPRI
RGTKNPDRAK IIALQPDLVI ADQEENRERD VQALTAAGVP VYVTAIRSVA DVLEQYGRLA
AVLGAADAAA PGLTALRAAL AEAAQRAPQR RIPTLAFIWR DPWMAVGAET YAGDLLERCG
AENLGRRLPG RYPRASLETF MRLQPEVILL PNEPYAFSER DLVAFAPYGD VPAVRDGRVL
LCDGMMLTWP GLRAVRALRV FAEAIAGGER
|
|---|
| |