Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_2918 |
Symbol | |
ID | 5540408 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 3781214 |
End bp | 3782251 |
Gene Length | 1038 bp |
Protein Length | 345 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640895039 |
Product | histone deacetylase superfamily protein |
Protein accession | YP_001432998 |
Protein GI | 156742869 |
COG category | [B] Chromatin structure and dynamics [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGAACAG CCATCGCCAT CAACCCGCGC CACGCAGCCC ACGACGAGCC GCGCCATGTC GAGCAGGCAG CCCGGTTACA CGCGATAACC GCTGCGCTGA ACGCCAGTGG TCTGCGCGCG TCGCTGCTCG AGATTCCGGC GCGTCCGGCG ACTGAGGATC AGTTGCTCGC AGTCCATAGC CCATCGATGA TCGAACTGGT GCGCTGGTCG GCAAATCGCC CGCATTCGTG GATTGATCAC GACACGTATA CCACTTCAGC CAGTTGGGAC GCCGCTCTCA TGGCGGCAGG AACAGCAGTA GCAGTCGTCG AAGCAGTCGT TGGCGGGTCG GCGCGGAATG GCTTTGCGCT CGTGCGCCCT CCCGGTCACC ACGCAACACC GACCGAGTCA ATGGGTTTTT GCCTGTTCAA CAATGTTGCA GTTGCGGCGC GCTACGCCAT TGACCATCTG AGCATTGGGC GCGTTGCCAT CGTCGATTTC GATGTGCACC ACGGAAATGG CACACAGGAC ATCTTTTACA CGGATGATCG CGTCTTCTTC TGTTCGACGC ACGCTTCGCC GCTCTACCCT GGCACCGGCG CCGAACGCGA CATTGGTTCG GGCAAAGGGC ATGGCACGAC GCTGAACCTG CCATTGCCCC ACGGCGTCGG CGACGCTGGT TTTGCCCGCC TGTTCGATGA TGTTGTCATC CCGGCGATTC GCCGCTATCG CCCCGACCTG ATCCTGGTCT CCGCCGGGTA TGATGGTCAC TGGGCAGACC CACTCGGTCC GTTGACGCTG TCGGTCGCCG GGTATGCGGC GCTGACGCGG CGCCTGATGG AAGCAGCGGA AGAGGTCTGC CGGGGACGGA TGGTGCTGGT GCTCGAAGGC GGCTATCATC TGAGAGCGCT GGCAGCCAGT GCAATGGCAT GCCTCGAAGT GCTGACGAAC AAGAATAGCA TTGTCGTTGA CCCGCTCGGA CCCGCAGGCG AATCGGAACC GGATGTGTCG GCACTGATCG CCCGTATGCG CCAGAACCAT CCCTTGCTCG CCGGATAA
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Protein sequence | MRTAIAINPR HAAHDEPRHV EQAARLHAIT AALNASGLRA SLLEIPARPA TEDQLLAVHS PSMIELVRWS ANRPHSWIDH DTYTTSASWD AALMAAGTAV AVVEAVVGGS ARNGFALVRP PGHHATPTES MGFCLFNNVA VAARYAIDHL SIGRVAIVDF DVHHGNGTQD IFYTDDRVFF CSTHASPLYP GTGAERDIGS GKGHGTTLNL PLPHGVGDAG FARLFDDVVI PAIRRYRPDL ILVSAGYDGH WADPLGPLTL SVAGYAALTR RLMEAAEEVC RGRMVLVLEG GYHLRALAAS AMACLEVLTN KNSIVVDPLG PAGESEPDVS ALIARMRQNH PLLAG
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