Gene Rcas_2918 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_2918 
Symbol 
ID5540408 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp3781214 
End bp3782251 
Gene Length1038 bp 
Protein Length345 aa 
Translation table11 
GC content62% 
IMG OID640895039 
Producthistone deacetylase superfamily protein 
Protein accessionYP_001432998 
Protein GI156742869 
COG category[B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGAACAG CCATCGCCAT CAACCCGCGC CACGCAGCCC ACGACGAGCC GCGCCATGTC 
GAGCAGGCAG CCCGGTTACA CGCGATAACC GCTGCGCTGA ACGCCAGTGG TCTGCGCGCG
TCGCTGCTCG AGATTCCGGC GCGTCCGGCG ACTGAGGATC AGTTGCTCGC AGTCCATAGC
CCATCGATGA TCGAACTGGT GCGCTGGTCG GCAAATCGCC CGCATTCGTG GATTGATCAC
GACACGTATA CCACTTCAGC CAGTTGGGAC GCCGCTCTCA TGGCGGCAGG AACAGCAGTA
GCAGTCGTCG AAGCAGTCGT TGGCGGGTCG GCGCGGAATG GCTTTGCGCT CGTGCGCCCT
CCCGGTCACC ACGCAACACC GACCGAGTCA ATGGGTTTTT GCCTGTTCAA CAATGTTGCA
GTTGCGGCGC GCTACGCCAT TGACCATCTG AGCATTGGGC GCGTTGCCAT CGTCGATTTC
GATGTGCACC ACGGAAATGG CACACAGGAC ATCTTTTACA CGGATGATCG CGTCTTCTTC
TGTTCGACGC ACGCTTCGCC GCTCTACCCT GGCACCGGCG CCGAACGCGA CATTGGTTCG
GGCAAAGGGC ATGGCACGAC GCTGAACCTG CCATTGCCCC ACGGCGTCGG CGACGCTGGT
TTTGCCCGCC TGTTCGATGA TGTTGTCATC CCGGCGATTC GCCGCTATCG CCCCGACCTG
ATCCTGGTCT CCGCCGGGTA TGATGGTCAC TGGGCAGACC CACTCGGTCC GTTGACGCTG
TCGGTCGCCG GGTATGCGGC GCTGACGCGG CGCCTGATGG AAGCAGCGGA AGAGGTCTGC
CGGGGACGGA TGGTGCTGGT GCTCGAAGGC GGCTATCATC TGAGAGCGCT GGCAGCCAGT
GCAATGGCAT GCCTCGAAGT GCTGACGAAC AAGAATAGCA TTGTCGTTGA CCCGCTCGGA
CCCGCAGGCG AATCGGAACC GGATGTGTCG GCACTGATCG CCCGTATGCG CCAGAACCAT
CCCTTGCTCG CCGGATAA
 
Protein sequence
MRTAIAINPR HAAHDEPRHV EQAARLHAIT AALNASGLRA SLLEIPARPA TEDQLLAVHS 
PSMIELVRWS ANRPHSWIDH DTYTTSASWD AALMAAGTAV AVVEAVVGGS ARNGFALVRP
PGHHATPTES MGFCLFNNVA VAARYAIDHL SIGRVAIVDF DVHHGNGTQD IFYTDDRVFF
CSTHASPLYP GTGAERDIGS GKGHGTTLNL PLPHGVGDAG FARLFDDVVI PAIRRYRPDL
ILVSAGYDGH WADPLGPLTL SVAGYAALTR RLMEAAEEVC RGRMVLVLEG GYHLRALAAS
AMACLEVLTN KNSIVVDPLG PAGESEPDVS ALIARMRQNH PLLAG