| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2887 |
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| Symbol | |
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| ID | 5540376 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 3744677 |
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| End bp | 3745732 |
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| Gene Length | 1056 bp |
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| Protein Length | 351 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640895007 |
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| Product | RpoD family RNA polymerase sigma factor |
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| Protein accession | YP_001432967 |
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| Protein GI | 156742838 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACCTCT GGAGTGCCGT GATGAACCAG GTCCCAACCT CTCGCTTCCG CTCACACGCG
ATTGAGCAGG AGGCAGACCC CGAAAGTGAT GTATTCTGGC AGACCGACTT TGCTGATGTT
GTGGCGCAAC GAGCCTCTTC CGGCGAAACG CTGGACGACT CAACACAAAT GTACCTGCGT
GAGATCGGTC AGGTCAGTCT GTTGAGCGCC GCAGAAGAGG TTGCGCTGGC GAACGACATC
AGCGCCGGTC GTGAAGCACA GGAGCGGTTG AACGTGCAGC ATTTCGACTC GGTAGACGAG
CGCCTGCTGC TCGAACGGCG CGTGGTACAG GCGGAGGAAG CGCGCCGTCG CCTGATCCAG
GCGAACCTGC GCCTGGTCGT CAGTGTTGCT AAAAAGTACA TCGGTGGTCC GCTCTCATTT
ATGGACCTGG TCCAGGAAGG GAACATTGGT CTGATGCGCG CCGTCGAGAA ATTCGACGCC
AGCAAAGGCA ACCGCTTTTC GACCTACGCG ACGTGGTGGA TTCGCCAGGC GATCACGCGT
GCTATCGCCG AACAGAGTCG CCTGATCCGG CTGCCGGTGC ATCTGAGCGA CGTCATTGCA
CAGGTGCGAC GGGTTGCGCG GCGTCTCGAG CAGTCGCTGG AGCGCGAGCC GACGATCAAA
GAGATCGCCG AAGCGGTCGG TATGCCGGAG CGCAAAGTGA AGATGCTGCT TCAGGCGTCT
GCACAGCCGA TTTCGCTGGA ACAGCCAATC ACGAATGATG GTGAAGGACA GATTGGTGAA
CTGCTGGCGG ATGACGGCGC CGATGCGCCG ATGGAGATTG CGACGCAACA CATGCTTCAG
CGCGACCTGG AACAGGCGTT GATGGACCTG CCTGATCGCG AGCGAGCGGT GTTGCGATTG
CGATATGGTC TGACTGACGG TCGGCGCCGG ACACTTGAGG AGATCGGTTC GGCATTTGGC
ATTACCCGCG AGCGGACCCG GCAGATCGAA GCCGATGCGC TGCGCCTGCT GCGGCGCCCT
GGCGTTAGCG CCCGGTTGCA GGCATATCTG GAGTAG
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| Protein sequence | MHLWSAVMNQ VPTSRFRSHA IEQEADPESD VFWQTDFADV VAQRASSGET LDDSTQMYLR
EIGQVSLLSA AEEVALANDI SAGREAQERL NVQHFDSVDE RLLLERRVVQ AEEARRRLIQ
ANLRLVVSVA KKYIGGPLSF MDLVQEGNIG LMRAVEKFDA SKGNRFSTYA TWWIRQAITR
AIAEQSRLIR LPVHLSDVIA QVRRVARRLE QSLEREPTIK EIAEAVGMPE RKVKMLLQAS
AQPISLEQPI TNDGEGQIGE LLADDGADAP MEIATQHMLQ RDLEQALMDL PDRERAVLRL
RYGLTDGRRR TLEEIGSAFG ITRERTRQIE ADALRLLRRP GVSARLQAYL E
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