Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_2849 |
Symbol | |
ID | 5540338 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 3694858 |
End bp | 3697743 |
Gene Length | 2886 bp |
Protein Length | 961 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640894978 |
Product | protein serine phosphatase with GAF(s) sensor(s) |
Protein accession | YP_001432938 |
Protein GI | 156742809 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2203] FOG: GAF domain [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
TIGRFAM ID | |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.230006 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGACACAAT CTGTGAGCGA TCCAATCGCC GAACTCCAGC GGGAGATCGA TGCGCTGCGC ATTGATCGAG AGCGCGACCT GCGGGCATTG AATGTGCTTC GCACCGTCAG CATCGCATGC CTGGGGAAAC CCAACGCGCG CGCCATCTTC GAAGCCATGC ATCAGGCGCT CCTGCCTGTG TTCCGGTACG ATGCGGCATA CTTCGCCGTC TGTGATCCCG GCAATCGGGA AACATTTCGC GCCGCGTTGC TCGTTGATGA AGAGAGCGTC GAATATCTGG AACACACGCC GTATGGTCCG CTGACCGGCA TGCTGGTGCA GCATCGTCAA CCATTGCTCT TTTACGACCT GCTGCACGAG CGCACGCTGC TGACACCGCC GCCGGAACGA TTTGGCAATC AGCAGAAGCA TTCACGATCC TGGATGGGGA CGCCGCTGCT GCTCGGCTAT GAGACGGTTG GGGTCATGTC GATCCAGAGT TATCGGCCAG GAATCTACAA TCAGGATCAC CTCGATCTGT TGCAGCGGAT AGGCAACCTG CTGGCGGTGG CGCTGGAGAA TGCGGCACTG GTGGAACAGC AACAGACGTT GAGCAACGAA CTGACGGAGC GTATCGCGGC GCGCACCCGC GAACTGACCA TGCTGACGGC GCTCGCCGAA GAACTCGCGT TCCAGCGCCC ACTCTCCGAG TTGCTGGATC GCGCGCTATC GCTCCTGGTG GATCATCTTG CCATGAGTGG CGGCGCTGTG CGATTGCTCT CTTCCGATGG CGCGGAACTG ACCCTCGCCG CCGCCTATGG GTTTCCTCCG GCGTATGCGG ATCAGTTGGC GCGAATCCCG GTTGCGAGCA GTCTGATGCG CAGCGTCATT GAAGAACGTC GCCCGCTGAT CATTGATAAT CTTGCGCAGA GCGAGCACTG GCAGCGTCTT GGGTTGCACT ACCGCTCGTT GATCGCCGTT CCGCTTCAGA TCGGTGATCG GGCGCTGGGT TCCTTGCTGC TGGTCGATAC GCGCCAGCGC GCCATTCAAG ACCAGGAGAT CGAATTTGTG CGCACCGTTG GGCATCAGAT CGCTATCGGC ATCAAGACTG CGCAGTTGCT TGCCGAGCGC GAACGGCAGG TCGCCGAACT ATCGGCGCTG AGCGACATTA GCCACGCGGC GAGCACCACG CTGGAACTGC GCGCGCTCCT GCGCCACATC GCGCGCGCCC TCGCCCGCTT CATGCGCGCC GACGTTTTTT CCGTCGCAGT CTACGATGCT GAACGAGACG TTATCAGCGA CGGCTTCTCG ATCGATGATG GCGAAGAGCA TTCCTTCTGG CAGTTTCAAC CGCCGCCGTC GGACTCGTTG ACCGCGTGGG TGCTGCGCAA CCAACGCGCG TTGCGTTTCG ATAACCTGCT CGACGAGATC GGACGTTACC CGGAACTGCG GTTGCACGCT ATCGGTACAG ATCGCATGGC GCTGTCGTGG CTCGGTGTAC CGCTGATCGG GCGCGAGGGG CAACCGATTG GCGTTCTCAC GGTGCAGGCA TACTCACCCT GTGCATTCGA TGATCGCGAT GAGCGGTTTC TGGCGGCGGT CGCGCGCCAG GTGGCGTTGC ACGTGCAGAA TGTCATGCTG TTCGCCGCCG AGCAGGAGGC GCGGCGTACC GCCGACACGC TGCGCGAAGT GGCGCGTGTA TTGAGCGCTG CGTTCAGTTC GGGTGAAGTG CTGAACGTGA TCCTGCGCGA ACTGAAAAAG GTCATTCCCT ACGATAGCGC CTCCATTATG TTGCGCGAAG GGAGGGTGCT GCGCGCCGCT GCCGTTGCTC CTGAGCATAT CGCCACCCGA CTGGACGCAA TGGACCGTCC ACTGAATGAA CCCGGCGCTG CTGTATGGGT TGTACACCAC AAACAACCAC TTTTGATCGA GGACGTCAGC GTATCGCACA TCTGGGCGCC CAAACCGCAG ATCAGCAACA TCCAATCGTG GATCGGCGTC CCATTGCTTG TCAAAGGTGA GGTGCTCGGC GTGCTGAACA TCGACTCAAC CCAAAAGGGG CGTTTCACCC AGCGCGATGT CGAGGTGGCG CAGGTCTTCG CCGACAACGC CGCGATTGCT ATCGAAAACG CCCGGCTGTA TGCTGAGTCG ATTGCGCGGC GCGAACAGGA GCTTGAGATC GCGCGCCGTA TCCAGTCGAA CCTGTTCCCC CGCGAGCTGC CGCGGCGTCA GGGGATCGCG CTGGCGGCGC GTTGCCTGCC TGCCCGTGAA GTCGGCGGCG ATTTCTTCGA CTGTTTTGCG CTTGGCGAAC GCCGCTCGAT TGCGGTGATG ATCGGCGATG CGTCGGGCAA GAGTGTGGCA GGAGCGCTCC TGATGGCGAT GGCGCGGTCG GTTGGACGCG CCGAAGCGTT CGATCATGAG GAACCGGCGC TGGTGCTGCG CGAAACGAAT CGGAGCGTGG CGCACGATGT GCCGCGCGGC ACTTTCGTGG CGCTCTGCTA TGCGACGATT GATCCGTCGG GGCGCATAGC GGTGGCGAAC GCCGGACAGT TGACGCCGGT GCTGGTGCAT GCCGACGGTG CTATTCAGTA TCTCTATCCG CCAGGACCAA CCCTGCCGCT CGGCATTCAG TCCAATATCG GGTATGAAAC GCTTGCCATC GATCTGGCGC CGGGCGATAC GGTCGTGTTC TTTACCGATG GGCTGGTCGA GGCGCACAAT GCAACTGGCG AGTTGTTCGG CTTCGAGCGC CTCGATGCGC TCCTGACGAA AGAAGCCGGT CTGCCGCCCG ACGCCCTCAT CGACCGCATC ATCGACGAAG TGATAGCCTT CATGGGCGAT ACGGTGCAAC ACGATGACAT GACCCTGGTT GTCGTGCAAT TCGGCGGGGA ACGGACGAAC GATTGA
|
Protein sequence | MTQSVSDPIA ELQREIDALR IDRERDLRAL NVLRTVSIAC LGKPNARAIF EAMHQALLPV FRYDAAYFAV CDPGNRETFR AALLVDEESV EYLEHTPYGP LTGMLVQHRQ PLLFYDLLHE RTLLTPPPER FGNQQKHSRS WMGTPLLLGY ETVGVMSIQS YRPGIYNQDH LDLLQRIGNL LAVALENAAL VEQQQTLSNE LTERIAARTR ELTMLTALAE ELAFQRPLSE LLDRALSLLV DHLAMSGGAV RLLSSDGAEL TLAAAYGFPP AYADQLARIP VASSLMRSVI EERRPLIIDN LAQSEHWQRL GLHYRSLIAV PLQIGDRALG SLLLVDTRQR AIQDQEIEFV RTVGHQIAIG IKTAQLLAER ERQVAELSAL SDISHAASTT LELRALLRHI ARALARFMRA DVFSVAVYDA ERDVISDGFS IDDGEEHSFW QFQPPPSDSL TAWVLRNQRA LRFDNLLDEI GRYPELRLHA IGTDRMALSW LGVPLIGREG QPIGVLTVQA YSPCAFDDRD ERFLAAVARQ VALHVQNVML FAAEQEARRT ADTLREVARV LSAAFSSGEV LNVILRELKK VIPYDSASIM LREGRVLRAA AVAPEHIATR LDAMDRPLNE PGAAVWVVHH KQPLLIEDVS VSHIWAPKPQ ISNIQSWIGV PLLVKGEVLG VLNIDSTQKG RFTQRDVEVA QVFADNAAIA IENARLYAES IARREQELEI ARRIQSNLFP RELPRRQGIA LAARCLPARE VGGDFFDCFA LGERRSIAVM IGDASGKSVA GALLMAMARS VGRAEAFDHE EPALVLRETN RSVAHDVPRG TFVALCYATI DPSGRIAVAN AGQLTPVLVH ADGAIQYLYP PGPTLPLGIQ SNIGYETLAI DLAPGDTVVF FTDGLVEAHN ATGELFGFER LDALLTKEAG LPPDALIDRI IDEVIAFMGD TVQHDDMTLV VVQFGGERTN D
|
| |