Gene Rcas_2840 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_2840 
Symbol 
ID5540329 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp3681259 
End bp3682377 
Gene Length1119 bp 
Protein Length372 aa 
Translation table11 
GC content61% 
IMG OID640894969 
Productspermidine/putrescine ABC transporter ATPase subunit 
Protein accessionYP_001432929 
Protein GI156742800 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3842] ABC-type spermidine/putrescine transport systems, ATPase components 
TIGRFAM ID[TIGR01187] spermidine/putrescine ABC transporter ATP-binding subunit 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.803293 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGCCTG GGCGCGCCAT GAACAACGGA ATAGCAGTTG ACCTGCGCAA CGTCGTCAAA 
CGCTTCGCCG ACGTGTGCGC CGTCGATCAC GTCTCAATGC AGATCCGTGA CGGCGAATTC
TTCTCGATGC TCGGTCCCTC CGGTTGCGGC AAGACGACGA CCCTGCGAAT GATTGCCGGG
TTTGAGTTTC CCACGTCGGG TGAAATCTTC CTCCACGGCA AATCGGTTGG AACCACGCCA
CCCTTTCGCC GCAACGTTAA TACGGTCTTT CAGTCGTATG CGCTCTTCCC CCATATGACG
GTGGCGGAGA ACGTCGCGTT TGGTCTGCGC ATGAAGAAGA CGCCGCCGGC CGACATGTCG
CGGCGGGTGA CCGAGGCGCT CGAACTCGTG CGCCTGGGCG ACTACGCGGC GCGCCGACCG
CGGCAACTCT CCGGCGGGCA GCAGCAGCGC GTGGCGCTGG CGCGCGCGCT CGTCAATCAC
CCTGAAGTGC TGCTGCTCGA TGAGCCGCTC GGCGCGCTCG ATCTGAAACT GCGCAAAGAA
ATGCAGCTCG AATTGAAAAG TCTCCAGGAG CGCGTCGGTA TTACATTCAT CTACGTCACG
CACGATCAGG AAGAGGCGCT GACGATGAGC GACCGCATTG CCGTTATGAA TGCCGGGAAA
GTCTTGCAGA TCGGCACGCC GACCGAGATC TACGAGCGTC CGGTCTGTCG CTTTGTCGCC
GATTTCATCG GCGAAACCAA TTTCATCGAG GGGAAGGTCG AGTCGGTGGA GTCTGGCGGT
ATTGCAACGA TTGTATCAGA TGATGGGTTG ACCATGCGCG GTCAGATGAT CCGTCCGGTC
CCTCCTGCAA CGAACGTCAC CCTTTCCATT CGCCCGGAGA AAGCGTTCCT GTCGGTGCAA
CCGCCTCCGC CCGGCACGCC GAACTGTCAT CAGGTGCGGG TGGAGCGCGT GGCGTATATC
GGGAGCGATA CCCGGATCGA TGTGCGCCTG GGCGCCCGCC TGTTTGACCT GTGGGAACAG
AACAGCCGCT CGACGCTCGA CCGTGATGCC TACTGGCAAC CCGGCGAAAC CGGGTATCTC
TGGTGGCCCG CAGAAAATGC CATCATCCTG ACAGAGTAA
 
Protein sequence
MLPGRAMNNG IAVDLRNVVK RFADVCAVDH VSMQIRDGEF FSMLGPSGCG KTTTLRMIAG 
FEFPTSGEIF LHGKSVGTTP PFRRNVNTVF QSYALFPHMT VAENVAFGLR MKKTPPADMS
RRVTEALELV RLGDYAARRP RQLSGGQQQR VALARALVNH PEVLLLDEPL GALDLKLRKE
MQLELKSLQE RVGITFIYVT HDQEEALTMS DRIAVMNAGK VLQIGTPTEI YERPVCRFVA
DFIGETNFIE GKVESVESGG IATIVSDDGL TMRGQMIRPV PPATNVTLSI RPEKAFLSVQ
PPPPGTPNCH QVRVERVAYI GSDTRIDVRL GARLFDLWEQ NSRSTLDRDA YWQPGETGYL
WWPAENAIIL TE