| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2840 |
|---|
| Symbol | |
|---|
| ID | 5540329 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 3681259 |
|---|
| End bp | 3682377 |
|---|
| Gene Length | 1119 bp |
|---|
| Protein Length | 372 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640894969 |
|---|
| Product | spermidine/putrescine ABC transporter ATPase subunit |
|---|
| Protein accession | YP_001432929 |
|---|
| Protein GI | 156742800 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
|---|
| TIGRFAM ID | [TIGR01187] spermidine/putrescine ABC transporter ATP-binding subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.803293 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCCTG GGCGCGCCAT GAACAACGGA ATAGCAGTTG ACCTGCGCAA CGTCGTCAAA
CGCTTCGCCG ACGTGTGCGC CGTCGATCAC GTCTCAATGC AGATCCGTGA CGGCGAATTC
TTCTCGATGC TCGGTCCCTC CGGTTGCGGC AAGACGACGA CCCTGCGAAT GATTGCCGGG
TTTGAGTTTC CCACGTCGGG TGAAATCTTC CTCCACGGCA AATCGGTTGG AACCACGCCA
CCCTTTCGCC GCAACGTTAA TACGGTCTTT CAGTCGTATG CGCTCTTCCC CCATATGACG
GTGGCGGAGA ACGTCGCGTT TGGTCTGCGC ATGAAGAAGA CGCCGCCGGC CGACATGTCG
CGGCGGGTGA CCGAGGCGCT CGAACTCGTG CGCCTGGGCG ACTACGCGGC GCGCCGACCG
CGGCAACTCT CCGGCGGGCA GCAGCAGCGC GTGGCGCTGG CGCGCGCGCT CGTCAATCAC
CCTGAAGTGC TGCTGCTCGA TGAGCCGCTC GGCGCGCTCG ATCTGAAACT GCGCAAAGAA
ATGCAGCTCG AATTGAAAAG TCTCCAGGAG CGCGTCGGTA TTACATTCAT CTACGTCACG
CACGATCAGG AAGAGGCGCT GACGATGAGC GACCGCATTG CCGTTATGAA TGCCGGGAAA
GTCTTGCAGA TCGGCACGCC GACCGAGATC TACGAGCGTC CGGTCTGTCG CTTTGTCGCC
GATTTCATCG GCGAAACCAA TTTCATCGAG GGGAAGGTCG AGTCGGTGGA GTCTGGCGGT
ATTGCAACGA TTGTATCAGA TGATGGGTTG ACCATGCGCG GTCAGATGAT CCGTCCGGTC
CCTCCTGCAA CGAACGTCAC CCTTTCCATT CGCCCGGAGA AAGCGTTCCT GTCGGTGCAA
CCGCCTCCGC CCGGCACGCC GAACTGTCAT CAGGTGCGGG TGGAGCGCGT GGCGTATATC
GGGAGCGATA CCCGGATCGA TGTGCGCCTG GGCGCCCGCC TGTTTGACCT GTGGGAACAG
AACAGCCGCT CGACGCTCGA CCGTGATGCC TACTGGCAAC CCGGCGAAAC CGGGTATCTC
TGGTGGCCCG CAGAAAATGC CATCATCCTG ACAGAGTAA
|
|---|
| Protein sequence | MLPGRAMNNG IAVDLRNVVK RFADVCAVDH VSMQIRDGEF FSMLGPSGCG KTTTLRMIAG
FEFPTSGEIF LHGKSVGTTP PFRRNVNTVF QSYALFPHMT VAENVAFGLR MKKTPPADMS
RRVTEALELV RLGDYAARRP RQLSGGQQQR VALARALVNH PEVLLLDEPL GALDLKLRKE
MQLELKSLQE RVGITFIYVT HDQEEALTMS DRIAVMNAGK VLQIGTPTEI YERPVCRFVA
DFIGETNFIE GKVESVESGG IATIVSDDGL TMRGQMIRPV PPATNVTLSI RPEKAFLSVQ
PPPPGTPNCH QVRVERVAYI GSDTRIDVRL GARLFDLWEQ NSRSTLDRDA YWQPGETGYL
WWPAENAIIL TE
|
|---|
| |