| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2805 |
|---|
| Symbol | |
|---|
| ID | 5540292 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 3627056 |
|---|
| End bp | 3630529 |
|---|
| Gene Length | 3474 bp |
|---|
| Protein Length | 1157 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640894932 |
|---|
| Product | serine/threonine kinase protein |
|---|
| Protein accession | YP_001432894 |
|---|
| Protein GI | 156742765 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair
[R] General function prediction only
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0515] Serine/threonine protein kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGACC ATGCTGCAAA TGAGCAGACC ATCGGCGCTT ATCGCCTGGA TGAGCAATTG
AGCGTCGATA GCGCCGGCGC CGTCTATCGC GCGTATCACA CACCCACCGG TCAACCGGTG
GTGATCCGGG TGTTATCGCC GGAGCAGGTC GCAACGCCTG GCTTCCGTGA GCGTTTCGAG
CGCGACATGC GCGCCGTTGC AGCGCTGTAC CACCCGCATA TCGTCGAGTT GTACGAATTT
GGCATCAGCG AGGGGCGCGC CTTTATCGTT GGTGAATTTC CGTCCGGCGG ATCGTTGCAG
GAGATGGTGC AAAGACGCTC GCTGCCGCTG CGCCTGTGCG TCGAATGCGC GCGCCAGATG
GCAGTGGCGC TCAGCGCGGC GCACGCGCGC GGCGTGGTCC ATGGCGCGCT CAAACCGGAA
AGCATTGCCG TCTTCCCGGA ACCAGGCGGC GGGTATCTGT TGAAGGTTGG CGATTTTGGC
ATCGCGCGCC TGATCGCTCC AACCGCTGCC AACCCTGCCG CCTATCGCGC CCCGGAATTG
CGCGCCGGCA GTGAACCTGA CCCACGCACT GATTGCTATG CGCTCGGCGC GCTGCTGTAC
GAAATGATCG TTGGCTCGCC CCCGCCGCTC ACTGCTATTC CGCCGTTGCG TCTGGTGCGC
CCGGATGCGC CTGCGGACCT GGAAGCGCTC GTGGCGCGTT GTCTGGCATC TGCGCCTGCG
GATCGCTTCG AGATGCACGA ATTGGTGGAA GCGCTCAAAG CGTTGGTTGT GGCAATGGGT
GAACGCATGT CAACGGTTTC TGCCAGCGAC TCGACCATGA TCGAGCAGAT CCCTGCTGCC
GATGATGTGA CCGTCGCCGC CCATGCCATC CCGCCAGCGC CCGCTGATGT GACGATCATT
GAGGCGCCGC CGGCGCCGCC TGCCGACGCG ACCATGATGG TCTCTGGCGA AGAGACGGTG
ATCGAACCGG CGCTGGCGGC GACTTCAGCC GATGCAACCG TCATCAAGGC GGAAGAGAGC
GAAGCAGTAG CAACAGCGCT GCCGGCATCC GCCGAAGAGA CGCTGATCGA ACCGACGCCT
GTCAGCGCCG TCGCCGACGC GACTGCGGCG CTGATCGCCG ATGAAGCGTC GCCTGCCATG
CCTGTGAGCA ACGCTTCTGC CGCAGCGTCG CCGGCGGAGG CAGCCGATGA GGCACTGACC
GTTCTGCCAG AATCGCCACA GCAACCGTCC CTTGCCGCCA GCAGCGTGGC GGGGCCATCT
GAGGTTCCGC CCGATGAGGC ATTGACCATT CTGCCAGAAT CGGCGCCGGC GGTCGGTGCG
CCGCTGCCGC AGGTCTCAGC CACGCAGTCG CTCATGATCG CAACGCCGCC TCCCGGTTTT
CCGGCGTTGC CGCCGCCGTC GAGCATGCCG CAGGTGCAGG TGCTCGACAA CCATGGCGCT
CCGTTGCATC TCGTCAATCT GACCGGCGAT GGCTTGGCAA TTGGTCGGTC GGAGAGTAAT
GATCTGACAT TGCCTGATGA GAGCGTTTCC GAGGAACACG CCTTTATCGA TTGGGATGGG
CGGCAGGTGA CGATTACGGA CCTTGGCTCG AAGAATGGGA CGTTCGTCGC CGGTGTGCGT
CTGTCTGCCC AGGATCGGTA TCCGTGGCAG GGTGGCGCTC CGGTGCGTAT CGGAGTCTAC
TGGTTACGCC TGATTCCGCC GCTGATGCAG GCAGCAAGCG TTGTTGCGCC GGTTGCCTAC
GGCGCTCCCG GTCCCACGGC AGTTGTGGCG GCGCAACCCG CAAGCGCGCC CGCCACGCCG
CCGGTTGCGC CGGCGCCCCG CCAGCCAGCG CCGGTAACGC CGAGTTTTGG CGCACCGGTG
ATGACGCCGC CGACTGCCGC GCCCACGCAA ATGCCGCCTC CAGGCGTTGC GCGCAGCGCA
TCTCCAACGC AAACGCCTCC ACCGACCGGC GGCGCTCCGC CGGATGTGAT TGGCGTCACC
CAACCGCCGC TCAGTTCGAA CCGCTACGGT GTCGAACTCG AACAGGATGT GATGACTCTT
ACTCCTGGCA TGCCGTCTGT TCTGCGCATG ACGCTGTACA ACTACAGCGA CAATGTCGAT
CATCTGCGGG TTGAGGTGCA GGGTGTGCCG GAAACCTGGA TTCAGGGTCC GTTGCCGGAG
CCGCAACTGC TGCCAAATGG TCGCACGCCG GTCGCGCTCA ATATTAATGT GCCGCGCACG
CCGGAGAACC GCGCCGGTCC CTACCCGGTC ACGCTGTATG CCCGCTCGCG CAGTCGACCA
AATGAGGCGG GCATCGCACA GGCAACCTGG AATGTCCAGG CATTTACCGA GCACCGGCTG
GAATTGAAAC CGCGCCGCGT CATCGGATGG TTCAGGGCGT CGTACAATCT GGCGCTGACG
AATGCCGGGA ATGTGCCGAT GCGCTACACC GTTGTCGGCG AGGACGACGA GCAGGCGCTT
GCCTTCAACC TGGGGGAGGA TGCCGTTGCG CTCGAACCCG GTGCATCATT CAGGCATCGC
CTGGTGGTGC GCGGTCCGAT CCGCTGGTTT GGATCGCCCC AACCGCGCAG TTTCTCGATC
CATGCGCGCA CAGAAAAGCG TTCCGACGCT CAAACGTCAT CGGCGCAGTT CGTGCAACGC
GCTCTGATAC CGCCGTGGCT CATTCCGATA GCACTCCTGG CGTTTCTGGC GATTGTCTAC
TTCGTGACAC GCCCGCCGGT CATTCGCAAC CCGCGCTTTG AAGTCTCGCC GCAGATCGCC
GGTCAGCCGG CGCGCCTGAT CTATGAAATT GACAATGCGC AGCGTGTCGA ACTGTTGCCG
TCTGGCATAC AGGCGCCTGC CGCATCCGGT CGCCGGACCT TCGAGTTTCT CGACGCGACC
GCCATTCCTC CCGATCTGAG CATCCTGGCG ATTAGCCGGT TTGGCATTCG TGCAGAGGCG
TCGGTCGTTG TTGCCGTGGT GACACCAACT CCGACGCCGC AACCAACCAT CACATCGTCG
CCGCCAACTG TGGCGCCAAC CGCAGAACCT CTGCCTCTGC CAACCGCAGC GCCACCGCCT
CCCGCGCCGC CGCCTCCCGC GCCGCCTGCG CCCCCGGCGG CCACCCCAAC ACCTGACGTG
TCGCTCGCCG ATGTGGTGCG GTTTGAGTGT CGATCTGGTG ATCGGATCGT GCTCACCGGC
ATCGGACCGC CGCGTGAGTC ATTCCTCCTG TACTTCGGAC GGCGCGCGGT GAGTGGAGGG
AGCGTTGCGC CCAATGGCGT CTACCGGATT GACATGCTGG TTGGACCCGA ACGTCCGGGA
GAGTATCCGG TCAGCGTTCG GTTGCGCCTG AGCGACCGCC CACTCCCGAT CCGCACATAC
CAGTATGGCG CGGCGCAGTT GGTCAATCTG GAGAGCATCG CCCCAACCGC AGCGCCGGTC
GAGTTGATGT GCATCGTGCC GCGCGCCAGA CCGACGCCAA CGGTTGCGCC GTAA
|
|---|
| Protein sequence | MPDHAANEQT IGAYRLDEQL SVDSAGAVYR AYHTPTGQPV VIRVLSPEQV ATPGFRERFE
RDMRAVAALY HPHIVELYEF GISEGRAFIV GEFPSGGSLQ EMVQRRSLPL RLCVECARQM
AVALSAAHAR GVVHGALKPE SIAVFPEPGG GYLLKVGDFG IARLIAPTAA NPAAYRAPEL
RAGSEPDPRT DCYALGALLY EMIVGSPPPL TAIPPLRLVR PDAPADLEAL VARCLASAPA
DRFEMHELVE ALKALVVAMG ERMSTVSASD STMIEQIPAA DDVTVAAHAI PPAPADVTII
EAPPAPPADA TMMVSGEETV IEPALAATSA DATVIKAEES EAVATALPAS AEETLIEPTP
VSAVADATAA LIADEASPAM PVSNASAAAS PAEAADEALT VLPESPQQPS LAASSVAGPS
EVPPDEALTI LPESAPAVGA PLPQVSATQS LMIATPPPGF PALPPPSSMP QVQVLDNHGA
PLHLVNLTGD GLAIGRSESN DLTLPDESVS EEHAFIDWDG RQVTITDLGS KNGTFVAGVR
LSAQDRYPWQ GGAPVRIGVY WLRLIPPLMQ AASVVAPVAY GAPGPTAVVA AQPASAPATP
PVAPAPRQPA PVTPSFGAPV MTPPTAAPTQ MPPPGVARSA SPTQTPPPTG GAPPDVIGVT
QPPLSSNRYG VELEQDVMTL TPGMPSVLRM TLYNYSDNVD HLRVEVQGVP ETWIQGPLPE
PQLLPNGRTP VALNINVPRT PENRAGPYPV TLYARSRSRP NEAGIAQATW NVQAFTEHRL
ELKPRRVIGW FRASYNLALT NAGNVPMRYT VVGEDDEQAL AFNLGEDAVA LEPGASFRHR
LVVRGPIRWF GSPQPRSFSI HARTEKRSDA QTSSAQFVQR ALIPPWLIPI ALLAFLAIVY
FVTRPPVIRN PRFEVSPQIA GQPARLIYEI DNAQRVELLP SGIQAPAASG RRTFEFLDAT
AIPPDLSILA ISRFGIRAEA SVVVAVVTPT PTPQPTITSS PPTVAPTAEP LPLPTAAPPP
PAPPPPAPPA PPAATPTPDV SLADVVRFEC RSGDRIVLTG IGPPRESFLL YFGRRAVSGG
SVAPNGVYRI DMLVGPERPG EYPVSVRLRL SDRPLPIRTY QYGAAQLVNL ESIAPTAAPV
ELMCIVPRAR PTPTVAP
|
|---|
| |